Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5798

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14165 and 14166 are separated by 256 nucleotides14166 and 14167 are separated by 216 nucleotides mRNA_5797: 14165 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 962,183 to 965,371 14165 mRNA_5798: 14166 - KOG3433 Protein involved in meiotic recombination/predicted coiled-coil protein, at 965,628 to 966,973 14166 mRNA_5799: 14167 - K09540 SEC63, DNAJC23 translocation protein SEC63, at 967,190 to 969,688 14167

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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964,650 - 14165 mRNA_5797 0.77 -0.8
964,716 - 14165 mRNA_5797 0.79 +1.7
965,283 - +0.4
965,601 - -0.4
965,635 - -0.2
966,025 - 14166 mRNA_5798 0.29 -0.2
966,286 - 14166 mRNA_5798 0.49 -0.4
966,785 - 14166 mRNA_5798 0.86 +0.5
966,917 - -0.4

Or see this region's nucleotide sequence