Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6040

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14407 and 14408 are separated by 107 nucleotides14408 and 14409 are separated by 600 nucleotides mRNA_6039: 14407 - Interpro F-box-like, at 1,498,979 to 1,500,418 14407 mRNA_6040: 14408 - Hypothetical Protein, at 1,500,526 to 1,502,132 14408 mRNA_6041: 14409 - Hypothetical Protein, at 1,502,733 to 1,506,557 14409

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,499,573 - 14407 mRNA_6039 0.41 -0.3
1,499,775 + 14407 mRNA_6039 0.55 -0.4
1,499,782 + 14407 mRNA_6039 0.56 +0.7
1,499,782 + 14407 mRNA_6039 0.56 -0.0
1,499,785 - 14407 mRNA_6039 0.56 +0.1
1,499,841 + 14407 mRNA_6039 0.60 -0.2
1,499,864 - 14407 mRNA_6039 0.61 -0.5
1,499,865 + 14407 mRNA_6039 0.62 -0.9
1,499,938 + 14407 mRNA_6039 0.67 +0.5
1,499,939 + 14407 mRNA_6039 0.67 -0.2
1,499,942 - 14407 mRNA_6039 0.67 -0.4
1,500,077 - 14407 mRNA_6039 0.76 +0.5
1,500,183 + 14407 mRNA_6039 0.84 +1.1
1,500,224 + 14407 mRNA_6039 0.86 -1.7
1,500,227 - 14407 mRNA_6039 0.87 +0.2
1,500,312 + +0.1
1,500,325 - -0.4
1,500,536 - +0.7
1,500,691 + 14408 mRNA_6040 0.10 -0.4
1,500,723 + 14408 mRNA_6040 0.12 -0.9
1,500,876 + 14408 mRNA_6040 0.22 -0.2
1,501,020 + 14408 mRNA_6040 0.31 +1.8
1,501,044 - 14408 mRNA_6040 0.32 +0.5
1,501,044 - 14408 mRNA_6040 0.32 -0.3
1,501,068 - 14408 mRNA_6040 0.34 -1.2
1,501,290 + 14408 mRNA_6040 0.48 -0.8
1,501,300 + 14408 mRNA_6040 0.48 +0.2
1,501,464 - 14408 mRNA_6040 0.58 -0.9
1,501,504 - 14408 mRNA_6040 0.61 +0.3
1,501,641 - 14408 mRNA_6040 0.69 -0.3
1,501,928 + 14408 mRNA_6040 0.87 +2.0
1,501,940 + 14408 mRNA_6040 0.88 -0.1
1,502,036 - +1.7
1,502,049 - +0.3
1,502,049 + +0.2
1,502,067 + +1.5
1,502,156 + -0.4
1,502,339 + +0.8
1,502,342 - -0.7
1,502,342 - -0.0
1,502,342 - -1.1
1,502,345 - -1.4
1,502,347 + +0.8
1,502,349 + -1.4
1,502,349 + +0.1
1,502,351 - -1.3
1,502,363 - +0.6
1,502,366 + -0.5
1,502,367 + -0.3
1,502,369 - -0.7
1,502,513 - -0.6
1,502,516 - +0.5
1,502,517 + -1.2
1,502,524 + +0.1
1,502,527 - +0.1
1,502,535 + -0.3
1,502,539 + -0.0
1,502,651 - +0.9
1,502,658 + -0.4
1,502,692 - +1.4

Or see this region's nucleotide sequence