Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6114

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14481 and 14482 are separated by 414 nucleotides14482 and 14483 are separated by 363 nucleotides mRNA_6113: 14481 - K17263 CAND1 cullin-associated NEDD8-dissociated protein 1, at 19,972 to 24,805 14481 mRNA_6114: 14482 - Hypothetical Protein, at 25,220 to 26,095 14482 mRNA_6115: 14483 - Hypothetical Protein, at 26,459 to 27,455 14483

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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24,221 - 14481 mRNA_6113 0.88 -0.2
24,280 + 14481 mRNA_6113 0.89 -0.8
24,283 - 14481 mRNA_6113 0.89 -0.7
24,327 + -0.1
24,337 - +0.9
24,337 - -0.8
24,344 + -0.2
24,392 - +0.9
24,441 + -1.4
24,495 - -0.6
24,552 - -0.1
24,555 + +1.2
24,639 + -0.5
24,665 - -0.5
24,666 - +1.3
24,805 + +0.3
25,098 + -0.5
25,124 - +0.2
25,227 + +0.4
25,495 + 14482 mRNA_6114 0.31 -0.6
25,675 + 14482 mRNA_6114 0.52 +0.5
25,801 - 14482 mRNA_6114 0.66 -0.4
26,028 - +0.5
26,111 - -0.2
26,132 - -0.7
26,139 + +0.9
26,438 + +0.2
26,739 + 14483 mRNA_6115 0.28 +0.1
26,741 - 14483 mRNA_6115 0.28 -0.8
26,865 + 14483 mRNA_6115 0.41 +0.6
26,871 - 14483 mRNA_6115 0.41 -0.1
26,872 + 14483 mRNA_6115 0.41 -0.1
26,877 - 14483 mRNA_6115 0.42 +1.7
26,898 + 14483 mRNA_6115 0.44 -0.4
26,996 - 14483 mRNA_6115 0.54 -0.1
27,001 - 14483 mRNA_6115 0.54 +0.4
27,004 - 14483 mRNA_6115 0.55 -0.9
27,009 - 14483 mRNA_6115 0.55 +0.2
27,058 - 14483 mRNA_6115 0.60 -0.6

Or see this region's nucleotide sequence