Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6132

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14499 and 14500 are separated by 316 nucleotides14500 and 14501 are separated by 923 nucleotides mRNA_6131: 14499 - K01057 PGLS, pgl, devB 6-phosphogluconolactonase, at 79,041 to 80,063 14499 mRNA_6132: 14500 - K20630 CHN1_2, ARHGAP2_3 chimaerin, at 80,380 to 84,392 14500 mRNA_6133: 14501 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 85,316 to 87,118 14501

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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80,394 + -0.0
80,704 - +0.2
81,721 - 14500 mRNA_6132 0.33 -0.3
81,745 - 14500 mRNA_6132 0.34 +0.5
81,903 - 14500 mRNA_6132 0.38 +0.6
81,942 + 14500 mRNA_6132 0.39 -1.2
82,069 + 14500 mRNA_6132 0.42 +2.2
82,481 + 14500 mRNA_6132 0.52 -0.5
82,506 - 14500 mRNA_6132 0.53 +0.0
82,783 - 14500 mRNA_6132 0.60 -1.2
83,013 - 14500 mRNA_6132 0.66 +0.0
83,022 + 14500 mRNA_6132 0.66 +0.3
83,195 - 14500 mRNA_6132 0.70 +0.3
84,043 - +1.8
84,314 + +0.3
84,582 + +1.0
84,720 - +0.5
84,721 - -0.2
84,869 - -0.1
84,871 - +0.6
84,890 - +1.7
84,935 + -0.2
85,033 - +1.0
85,039 - +0.4
85,045 - +0.2
85,056 - -0.1
85,064 - +0.3
85,075 - -2.2
85,095 - +0.4
85,099 - +0.1
85,106 - -1.4
85,113 - +0.6
85,115 + -0.0
85,144 + -0.0
85,282 - -0.1

Or see this region's nucleotide sequence