Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6142

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14509 and 14510 are separated by 812 nucleotides14510 and 14511 are separated by 163 nucleotides mRNA_6141: 14509 - HMMPfam-GGL domain-PF00631,SUPERFAMILY--SSF48670, at 106,663 to 106,926 14509 mRNA_6142: 14510 - Hypothetical Protein, at 107,739 to 108,173 14510 mRNA_6143: 14511 - HMMPfam-Fungal specific transcription factor domain-PF04082,SMART-Fungal specific transcription factor domain-SM00906, at 108,337 to 111,111 14511

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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106,999 - +0.4
107,009 + +1.0
107,019 + +0.3
107,025 - +0.2
107,029 - +1.1
107,034 - +0.6
107,155 + -0.1
107,166 + -2.2
107,170 + -0.1
107,171 + +0.4
107,175 - -0.5
107,296 - +1.0
107,308 + +0.2
107,310 + +1.2
107,310 - +0.9
107,320 - +1.1
107,332 - +0.8
107,333 - -0.0
107,346 - +1.1
107,359 - +1.5
107,363 + -1.4
107,371 - +0.3
107,372 - +1.0
107,375 - +0.4
107,376 + +0.8
107,390 + -0.9
107,395 + +0.4
107,488 - +0.9
107,507 + -0.6
107,523 - +0.4
107,535 - +0.2
107,535 - +0.7
107,536 + +0.8
107,542 + -0.7
107,559 + +0.2
107,574 - +0.5
107,674 - +0.7
107,691 - +0.2
107,819 - 14510 mRNA_6142 0.18 -0.8
107,981 + 14510 mRNA_6142 0.56 -0.1
108,234 - +0.7
108,409 - +0.8
108,537 - -0.2
109,006 + 14511 mRNA_6143 0.24 +0.2
109,083 + 14511 mRNA_6143 0.27 +0.1

Or see this region's nucleotide sequence