Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6150

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14517 and 14518 are separated by 345 nucleotides14518 and 14519 are separated by 196 nucleotides mRNA_6149: 14517 - Hypothetical Protein, at 122,739 to 123,475 14517 mRNA_6150: 14518 - KOG3399 Predicted Yippee-type zinc-binding protein, at 123,821 to 124,477 14518 mRNA_6151: 14519 - Hypothetical Protein, at 124,674 to 126,819 14519

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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122,854 + 14517 mRNA_6149 0.16 -0.2
122,955 - 14517 mRNA_6149 0.29 +1.0
123,260 - 14517 mRNA_6149 0.71 +0.4
123,266 + 14517 mRNA_6149 0.72 -0.3
123,402 + +0.0
123,533 - -0.3
123,534 + +0.0
123,676 + -0.4
123,731 + -0.1
123,850 + -0.0
124,038 + 14518 mRNA_6150 0.33 +0.2
124,102 + 14518 mRNA_6150 0.43 -0.2
124,299 + 14518 mRNA_6150 0.73 -0.3
124,382 - 14518 mRNA_6150 0.85 -0.1
124,392 - 14518 mRNA_6150 0.87 +0.1
124,531 - -0.9
124,573 + +0.0
124,676 - +0.1
124,700 + +1.0
124,707 - -1.1
125,151 - 14519 mRNA_6151 0.22 +0.1
125,318 + 14519 mRNA_6151 0.30 -0.3

Or see this region's nucleotide sequence