Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6154

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14522 and 14523 are separated by 332 nucleotides mRNA_6154: 14522 - K16667 PTPRG receptor-type tyrosine-protein phosphatase gamma, at 133,895 to 137,413 14522 mRNA_6155: 14523 - Hypothetical Protein, at 137,746 to 139,265 14523

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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132,931 + +0.5
133,134 - +0.3
133,280 - -1.0
133,280 + +0.8
133,297 + -0.4
133,297 + +1.2
133,299 + -0.5
133,347 - +0.5
133,402 - +2.7
133,449 - -0.5
133,449 - -0.1
133,456 + -0.1
133,459 - +0.2
133,459 - -0.3
133,462 + -1.4
133,474 - +0.0
133,474 - +0.6
133,475 + +0.3
133,476 - -1.0
133,498 - +1.1
133,498 + -0.3
133,506 + -0.1
133,509 + -0.6
133,597 + +0.7
133,600 - -0.4
133,618 - +0.1
133,628 + +0.3
133,630 - +0.5
133,632 - -0.2
133,639 + -0.1
133,648 - +0.1
133,663 - +1.6
133,669 + +0.0
133,672 - +1.1
133,677 - +0.9
133,689 - -0.1
133,845 + -1.3
133,961 + -0.8
133,984 + -1.7
134,120 + -1.3
134,121 - -0.6
134,125 + -0.5
134,129 - -0.7
134,262 + 14522 mRNA_6154 0.10 -0.5
134,545 - 14522 mRNA_6154 0.18 -0.5
134,561 - 14522 mRNA_6154 0.19 -1.1
134,574 + 14522 mRNA_6154 0.19 -1.4
134,594 + 14522 mRNA_6154 0.20 -0.7
134,600 - 14522 mRNA_6154 0.20 -1.6
134,832 - 14522 mRNA_6154 0.27 -1.0
134,846 - 14522 mRNA_6154 0.27 -0.8
134,847 - 14522 mRNA_6154 0.27 -0.6
134,865 + 14522 mRNA_6154 0.28 -1.0
135,016 + 14522 mRNA_6154 0.32 -1.2
135,137 + 14522 mRNA_6154 0.35 -0.6
135,219 - 14522 mRNA_6154 0.38 -1.1
135,427 + 14522 mRNA_6154 0.44 -0.7
135,523 - 14522 mRNA_6154 0.46 -0.7
135,543 + 14522 mRNA_6154 0.47 -1.1
135,573 - 14522 mRNA_6154 0.48 -0.6
135,916 - 14522 mRNA_6154 0.57 -0.8
136,134 + 14522 mRNA_6154 0.64 -1.0
136,139 + 14522 mRNA_6154 0.64 -1.0
136,187 - 14522 mRNA_6154 0.65 -3.1
136,260 - 14522 mRNA_6154 0.67 -1.1
136,283 - 14522 mRNA_6154 0.68 -1.0
136,300 + 14522 mRNA_6154 0.68 -0.9
136,334 - 14522 mRNA_6154 0.69 -0.6
136,477 + 14522 mRNA_6154 0.73 -0.9
136,716 - 14522 mRNA_6154 0.80 -1.2
136,943 + 14522 mRNA_6154 0.87 -0.9
137,001 - 14522 mRNA_6154 0.88 -1.0
137,009 + 14522 mRNA_6154 0.88 -1.1
137,129 + -0.9
137,269 - +0.0
137,302 - -0.8
137,364 - -1.1
137,402 + -0.1
137,531 + -0.9
137,654 + +0.8
138,325 - 14523 mRNA_6155 0.38 -1.1

Or see this region's nucleotide sequence