Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6247

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14614 and 14615 are separated by 436 nucleotides14615 and 14616 are separated by 204 nucleotides mRNA_6246: 14614 - Hypothetical Protein, at 345,803 to 347,833 14614 mRNA_6247: 14615 - K01551 arsA, ASNA1 arsenite-transporting ATPase, at 348,270 to 350,050 14615 mRNA_6248: 14616 - Interpro GET complex subunit GET2 0, at 350,255 to 351,472 14616

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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347,441 - 14614 mRNA_6246 0.81 -0.3
347,537 + 14614 mRNA_6246 0.85 +0.7
347,588 - 14614 mRNA_6246 0.88 +0.5
347,622 - 14614 mRNA_6246 0.90 -0.1
347,780 + -0.5
347,802 - +0.9
347,803 + +0.2
347,927 - +0.4
347,935 - -0.9
348,047 - +0.2
348,135 + -0.6
348,267 - +0.9
348,439 + +0.7
348,678 + 14615 mRNA_6247 0.23 -0.9
349,633 + 14615 mRNA_6247 0.77 +0.2
350,047 - +1.1
350,210 - -0.5
350,351 - +0.4
350,351 + +0.8

Or see this region's nucleotide sequence