Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6289

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14656 and 14657 are separated by 479 nucleotides14657 and 14658 are separated by 339 nucleotides mRNA_6288: 14656 - KOG0876 Manganese superoxide dismutase, at 448,035 to 449,039 14656 mRNA_6289: 14657 - Hypothetical Protein, at 449,519 to 450,929 14657 mRNA_6290: 14658 - KOG0394 Ras-related GTPase, at 451,269 to 452,760 14658

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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448,520 + 14656 mRNA_6288 0.48 -0.0
449,076 - -1.2
450,122 - 14657 mRNA_6289 0.43 +1.9
450,243 - 14657 mRNA_6289 0.51 +0.2
450,349 + 14657 mRNA_6289 0.59 +0.6
450,876 + -0.2
450,915 - +0.8
450,943 + -0.5
451,096 - -0.0
451,237 - +1.5
451,373 + +0.9
451,383 - -0.0
451,807 + 14658 mRNA_6290 0.36 +0.3

Or see this region's nucleotide sequence