Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6293

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14660 and 14661 are separated by 406 nucleotides14661 and 14662 are separated by 627 nucleotides mRNA_6292: 14660 - K15082 RAD7 DNA repair protein RAD7, at 455,485 to 457,859 14660 mRNA_6293: 14661 - K18467 VPS29 vacuolar protein sorting-associated protein 29, at 458,266 to 459,644 14661 mRNA_6294: 14662 - K00928 lysC aspartate kinase, at 460,272 to 462,518 14662

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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457,897 - +0.3
458,072 - +0.1
458,211 + -0.2
458,347 - -0.3
458,762 - 14661 mRNA_6293 0.36 -0.1
458,771 - 14661 mRNA_6293 0.37 -0.6
459,371 - 14661 mRNA_6293 0.80 +0.5
459,403 + 14661 mRNA_6293 0.82 +0.2
459,520 + -1.4
459,618 - -0.4
459,630 - -0.7
459,631 - +0.1
459,639 + +0.6
459,640 - +2.0
459,671 - +2.1
459,697 + -0.4
459,698 + +0.4
459,789 - +0.7
459,808 - +0.5
459,810 + +1.3
459,828 + +0.5
459,828 - +1.0
459,841 + +1.8
459,949 - +0.6

Or see this region's nucleotide sequence