Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6319

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14686 and 14687 are separated by 507 nucleotides14687 and 14688 overlap by 42 nucleotides mRNA_6318: 14686 - Hypothetical Protein, at 535,354 to 538,435 14686 mRNA_6319: 14687 - KOG1729 FYVE finger containing protein, at 538,943 to 540,662 14687 mRNA_6320: 14688 - Hypothetical Protein, at 540,621 to 541,463 14688

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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538,199 - -0.2
538,377 + +0.1
538,450 + +0.2
538,485 - +0.8
538,769 + -0.6
538,772 + +0.7
538,915 - -0.6
539,219 + 14687 mRNA_6319 0.16 -1.1
539,331 + 14687 mRNA_6319 0.23 +0.2
539,576 - 14687 mRNA_6319 0.37 -0.3
539,643 + 14687 mRNA_6319 0.41 -0.9
539,766 - 14687 mRNA_6319 0.48 -0.6
539,887 + 14687 mRNA_6319 0.55 -1.4
540,034 - 14687 mRNA_6319 0.63 -0.5
540,050 + 14687 mRNA_6319 0.64 -0.9
540,161 + 14687 mRNA_6319 0.71 -0.5
540,185 - 14687 mRNA_6319 0.72 -0.4
540,193 + 14687 mRNA_6319 0.73 +0.8
540,202 - 14687 mRNA_6319 0.73 -1.1
540,209 - 14687 mRNA_6319 0.74 -0.7
540,210 - 14687 mRNA_6319 0.74 -0.2
540,350 - 14687 mRNA_6319 0.82 -0.4
540,372 - 14687 mRNA_6319 0.83 +0.5
540,372 + 14687 mRNA_6319 0.83 +1.2
540,376 - 14687 mRNA_6319 0.83 -1.0
540,385 + 14687 mRNA_6319 0.84 -1.1
540,385 + 14687 mRNA_6319 0.84 -1.5
540,385 + 14687 mRNA_6319 0.84 -1.0
540,386 + 14687 mRNA_6319 0.84 -0.2
540,390 + 14687 mRNA_6319 0.84 -0.8
540,391 + 14687 mRNA_6319 0.84 -1.0
540,392 + 14687 mRNA_6319 0.84 +0.2
540,398 + 14687 mRNA_6319 0.85 -0.1
540,402 - 14687 mRNA_6319 0.85 -0.3
540,498 - -0.1
540,499 + -0.4
540,517 - -1.9
540,541 - -0.0
540,553 + -0.4
540,554 - -0.3
540,577 + -0.3
540,637 + -0.3
540,651 + -0.6
540,651 + -1.2
540,667 - -0.2
540,677 - -0.2
540,695 + -0.6
540,773 - 14688 mRNA_6320 0.18 +0.5
540,792 - 14688 mRNA_6320 0.20 +0.9
540,792 + 14688 mRNA_6320 0.20 -0.4
540,795 - 14688 mRNA_6320 0.21 -0.6
540,801 - 14688 mRNA_6320 0.21 -0.5
540,805 - 14688 mRNA_6320 0.22 -0.6
540,805 - 14688 mRNA_6320 0.22 -1.2
540,807 - 14688 mRNA_6320 0.22 +0.0
540,812 - 14688 mRNA_6320 0.23 +0.0
540,815 + 14688 mRNA_6320 0.23 -0.3
540,816 - 14688 mRNA_6320 0.23 -0.4
540,817 + 14688 mRNA_6320 0.23 +0.0
540,820 + 14688 mRNA_6320 0.24 -0.1
540,822 - 14688 mRNA_6320 0.24 +0.8
540,823 - 14688 mRNA_6320 0.24 -0.2
540,823 + 14688 mRNA_6320 0.24 +0.3
540,823 - 14688 mRNA_6320 0.24 +0.3
540,824 - 14688 mRNA_6320 0.24 +0.0
540,826 - 14688 mRNA_6320 0.24 +0.9
540,829 - 14688 mRNA_6320 0.25 -0.1
540,829 + 14688 mRNA_6320 0.25 -0.4
540,830 - 14688 mRNA_6320 0.25 -0.3
540,833 - 14688 mRNA_6320 0.25 +0.8
540,835 + 14688 mRNA_6320 0.25 -0.1
540,836 + 14688 mRNA_6320 0.26 -0.7
540,837 + 14688 mRNA_6320 0.26 +0.1
540,838 + 14688 mRNA_6320 0.26 +0.0
540,839 + 14688 mRNA_6320 0.26 -0.4
540,840 + 14688 mRNA_6320 0.26 -0.1
540,840 + 14688 mRNA_6320 0.26 -1.2
540,844 + 14688 mRNA_6320 0.26 +0.2
540,845 - 14688 mRNA_6320 0.27 -0.9
540,850 - 14688 mRNA_6320 0.27 +0.8
540,851 + 14688 mRNA_6320 0.27 +0.6
540,852 + 14688 mRNA_6320 0.27 -0.1
540,900 + 14688 mRNA_6320 0.33 +1.7
540,903 - 14688 mRNA_6320 0.33 +0.9
540,908 - 14688 mRNA_6320 0.34 +1.8
541,009 - 14688 mRNA_6320 0.46 +0.4
541,010 - 14688 mRNA_6320 0.46 -0.2
541,015 + 14688 mRNA_6320 0.47 -0.3
541,025 - 14688 mRNA_6320 0.48 -0.0
541,029 - 14688 mRNA_6320 0.48 -0.6
541,034 - 14688 mRNA_6320 0.49 -0.5
541,040 + 14688 mRNA_6320 0.50 +0.0
541,055 - 14688 mRNA_6320 0.51 -0.2
541,056 - 14688 mRNA_6320 0.52 -0.4
541,059 - 14688 mRNA_6320 0.52 -1.5
541,066 - 14688 mRNA_6320 0.53 -0.4
541,067 + 14688 mRNA_6320 0.53 +0.4
541,073 + 14688 mRNA_6320 0.54 -0.1
541,108 - 14688 mRNA_6320 0.58 -1.1
541,111 + 14688 mRNA_6320 0.58 -0.5
541,124 - 14688 mRNA_6320 0.60 -0.2
541,131 + 14688 mRNA_6320 0.60 +0.0
541,134 - 14688 mRNA_6320 0.61 +0.2
541,149 + 14688 mRNA_6320 0.63 -1.3
541,149 - 14688 mRNA_6320 0.63 -0.6
541,155 + 14688 mRNA_6320 0.63 +1.4
541,159 + 14688 mRNA_6320 0.64 -0.6
541,165 - 14688 mRNA_6320 0.65 +0.2
541,171 - 14688 mRNA_6320 0.65 -0.2
541,182 + 14688 mRNA_6320 0.67 -0.1
541,182 - 14688 mRNA_6320 0.67 -0.1
541,184 + 14688 mRNA_6320 0.67 -0.7
541,226 + 14688 mRNA_6320 0.72 -0.8
541,234 - 14688 mRNA_6320 0.73 -0.0
541,235 - 14688 mRNA_6320 0.73 -1.3
541,237 + 14688 mRNA_6320 0.73 +0.2
541,248 + 14688 mRNA_6320 0.74 +0.5
541,250 + 14688 mRNA_6320 0.75 -0.1
541,252 - 14688 mRNA_6320 0.75 -0.7
541,253 + 14688 mRNA_6320 0.75 -0.5
541,264 - 14688 mRNA_6320 0.76 -0.0
541,293 - 14688 mRNA_6320 0.80 -0.0
541,295 - 14688 mRNA_6320 0.80 +0.2
541,330 + 14688 mRNA_6320 0.84 -0.6
541,332 - 14688 mRNA_6320 0.84 -0.2
541,334 - 14688 mRNA_6320 0.85 -0.0
541,343 - 14688 mRNA_6320 0.86 +0.3
541,348 - 14688 mRNA_6320 0.86 -0.1
541,360 - 14688 mRNA_6320 0.88 +2.2
541,371 - 14688 mRNA_6320 0.89 -0.0
541,373 + 14688 mRNA_6320 0.89 +0.2
541,380 + -0.2
541,380 + +0.5
541,397 - -0.1
541,405 + +0.6
541,411 - -1.1
541,464 + -0.4
541,476 - +0.2
541,483 + +0.0
541,501 + -1.2
541,510 + -1.2
541,517 - -0.5
541,520 + +0.5
541,525 + +0.0
541,529 - -0.2

Or see this region's nucleotide sequence