Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6337

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14704 and 14705 are separated by 265 nucleotides14705 and 14706 are separated by 64 nucleotides mRNA_6336: 14704 - K14773 UTP23 U3 small nucleolar RNA-associated protein 23, at 577,858 to 579,187 14704 mRNA_6337: 14705 - Hypothetical Protein, at 579,453 to 580,646 14705 mRNA_6338: 14706 - KOG1515 Arylacetamide deacetylase, at 580,711 to 582,330 14706

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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579,215 - -0.0
579,522 + +0.0
579,537 + -0.8
579,666 + 14705 mRNA_6337 0.18 -0.1
580,091 - 14705 mRNA_6337 0.53 +0.0
580,392 - 14705 mRNA_6337 0.79 -0.7
580,682 - +0.5
580,804 + +0.4
581,004 + 14706 mRNA_6338 0.18 +0.8
581,004 - 14706 mRNA_6338 0.18 -0.3
581,272 - 14706 mRNA_6338 0.35 +0.2
581,443 + 14706 mRNA_6338 0.45 +0.1

Or see this region's nucleotide sequence