Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6359

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14727 and 14728 are separated by 661 nucleotides mRNA_6359: 14727 - KOG1812 Predicted E3 ubiquitin ligase, at 630,775 to 633,081 14727 mRNA_6360: 14728 - K17790 TIM22 mitochondrial import inner membrane translocase subunit TIM22, at 633,743 to 634,504 14728

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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629,794 + -0.5
629,797 + +0.4
629,809 - -0.3
629,812 - +0.4
629,827 - +0.9
629,842 - +0.3
629,850 + +0.6
629,858 - -0.3
629,859 + +0.4
629,864 + -0.6
629,893 - +0.2
629,899 + +0.4
629,902 + -0.6
629,903 - +0.2
629,911 + +0.1
629,917 - -0.1
629,919 - +2.2
629,926 + -0.0
629,956 + +0.2
629,958 + +0.6
629,959 - +0.1
629,976 - -1.0
629,984 + -0.1
629,985 + +1.3
630,000 - +1.3
630,003 + -1.0
630,004 + +2.8
630,008 + -0.6
630,010 + -0.4
630,013 - -0.8
630,024 + -1.0
630,036 - +0.6
630,040 - -0.6
630,041 + -0.2
630,056 - +1.0
630,064 - -0.5
630,159 + +0.0
630,165 - +0.3
630,169 - +0.9
630,183 + -0.3
630,198 - -0.2
630,220 + -0.8
630,234 + +0.0
630,280 + +0.7
630,281 + +0.3
630,285 - +0.0
630,312 - +1.7
630,325 + -0.0
630,343 - +0.6
630,351 + +0.2
630,355 - -0.5
630,355 - -0.3
630,362 - +1.4
630,373 - +0.3
630,375 + +0.1
630,376 - -0.6
630,376 - -1.6
630,379 + -0.5
630,390 + -0.0
630,397 - +0.6
630,446 + +0.4
630,459 - +0.7
630,542 + +1.2
630,588 - +0.5
630,604 - -0.1
630,984 - +0.9
631,191 - 14727 mRNA_6359 0.18 +0.1
631,271 - 14727 mRNA_6359 0.21 +0.3
631,301 - 14727 mRNA_6359 0.23 +0.6
631,310 + 14727 mRNA_6359 0.23 +0.3
631,622 + 14727 mRNA_6359 0.37 +0.6
631,798 - 14727 mRNA_6359 0.44 -1.0
632,038 - 14727 mRNA_6359 0.55 +1.2
632,184 + 14727 mRNA_6359 0.61 +0.9
632,207 + 14727 mRNA_6359 0.62 -0.2
632,533 - 14727 mRNA_6359 0.76 +0.5
632,673 - 14727 mRNA_6359 0.82 -0.9
632,771 - 14727 mRNA_6359 0.87 +0.1
632,903 + -0.4
632,915 - +0.0
632,951 + -0.1
633,227 - +0.5
633,239 + +0.2
633,350 + -0.3
633,352 - +0.1
633,363 - +0.1
633,368 - -0.4
633,377 + +0.9
633,508 + +0.8
633,508 - -0.3
633,682 - -0.2
633,762 - -1.2

Or see this region's nucleotide sequence