Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6396

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14763 and 14764 are separated by 690 nucleotides14764 and 14765 are separated by 856 nucleotides mRNA_6395: 14763 - K19403 MCPH1 microcephalin, at 713,200 to 716,170 14763 mRNA_6396: 14764 - Hypothetical Protein, at 716,861 to 718,717 14764 mRNA_6397: 14765 - K02976 RP-S26e, RPS26 small subunit ribosomal protein S26e, at 719,574 to 720,317 14765

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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715,875 + -0.3
715,882 - -0.0
716,019 + -0.7
716,020 - +0.8
716,308 - +0.2
716,328 - -0.3
716,347 - +0.5
716,356 - +1.0
716,396 - -0.0
716,456 + +0.0
716,479 + +0.4
716,517 + -1.1
717,077 + 14764 mRNA_6396 0.12 -0.8
717,232 - 14764 mRNA_6396 0.20 -0.1
717,237 + 14764 mRNA_6396 0.20 +0.6
717,238 - 14764 mRNA_6396 0.20 -1.1
717,357 - 14764 mRNA_6396 0.27 -0.1
717,371 + 14764 mRNA_6396 0.27 -0.4
717,515 - 14764 mRNA_6396 0.35 -0.1
717,517 + 14764 mRNA_6396 0.35 -1.7
717,525 + 14764 mRNA_6396 0.36 -0.2
717,532 - 14764 mRNA_6396 0.36 +0.6
717,555 + 14764 mRNA_6396 0.37 -0.4
717,642 - 14764 mRNA_6396 0.42 +0.1
717,656 + 14764 mRNA_6396 0.43 +0.7
717,683 - 14764 mRNA_6396 0.44 -0.2
717,706 - 14764 mRNA_6396 0.46 +0.3
717,732 - 14764 mRNA_6396 0.47 -0.1
717,774 - 14764 mRNA_6396 0.49 +1.6
717,793 - 14764 mRNA_6396 0.50 -0.3
717,815 - 14764 mRNA_6396 0.51 +0.1
717,824 + 14764 mRNA_6396 0.52 -0.3
717,967 - 14764 mRNA_6396 0.60 -0.1
717,967 + 14764 mRNA_6396 0.60 +0.2
717,974 + 14764 mRNA_6396 0.60 +0.1
718,008 - 14764 mRNA_6396 0.62 -0.9
718,122 - 14764 mRNA_6396 0.68 +0.4
718,394 - 14764 mRNA_6396 0.83 +0.3
718,403 + 14764 mRNA_6396 0.83 -1.5
718,579 + +0.8
718,717 - -0.5
718,717 - +1.9
718,732 + -0.3
718,738 - +0.2
718,746 + +0.4
718,873 + -0.3
718,878 - +1.1
718,890 - -0.4
718,893 + -0.4
718,900 + +0.2
719,020 - +1.2
719,020 + -1.4
719,027 + -0.1

Or see this region's nucleotide sequence