Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6399

Experiment: 40 hrs Low Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14766 and 14767 are separated by 1 nucleotides14767 and 14768 are separated by 423 nucleotides mRNA_6398: 14766 - K14556 DIP2, UTP12, WDR3 U3 small nucleolar RNA-associated protein 12, at 720,765 to 724,339 14766 mRNA_6399: 14767 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,SUPERFAMILY--SSF57959, at 724,341 to 725,780 14767 mRNA_6400: 14768 - K15720 N4BP2 NEDD4-binding protein 2, at 726,204 to 728,180 14768

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
remove
724,204 + -0.1
724,382 - -0.2
724,562 + 14767 mRNA_6399 0.15 -1.6
724,786 - 14767 mRNA_6399 0.31 -0.9
724,939 + 14767 mRNA_6399 0.42 +0.4
724,946 + 14767 mRNA_6399 0.42 -0.3
725,096 - 14767 mRNA_6399 0.52 -0.7
725,102 + 14767 mRNA_6399 0.53 -0.0
725,375 + 14767 mRNA_6399 0.72 -1.5
725,812 - -0.8
725,814 - +0.3
725,824 + +1.0
725,830 + -2.1
725,835 - +0.4
725,839 - +0.2
725,978 - -0.0
725,980 - +0.7
726,005 - +0.1
726,013 + -0.8
726,068 - -0.1
726,069 - -0.4
726,095 + +0.7
726,232 - -1.0
726,244 + -0.5
726,386 + +0.3
726,397 + +0.1
726,706 + 14768 mRNA_6400 0.25 +0.5

Or see this region's nucleotide sequence