Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6426

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14793 and 14794 are separated by 294 nucleotides14794 and 14795 are separated by 106 nucleotides mRNA_6425: 14793 - SUPERFAMILY--SSF52047, at 769,482 to 770,429 14793 mRNA_6426: 14794 - ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 770,724 to 773,097 14794 mRNA_6427: 14795 - KOG0516 Dystonin, GAS (Growth-arrest-specific protein), and related proteins, at 773,204 to 778,326 14795

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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769,780 - 14793 mRNA_6425 0.31 +0.6
770,069 + 14793 mRNA_6425 0.62 -1.0
770,072 + 14793 mRNA_6425 0.62 -0.7
770,197 - 14793 mRNA_6425 0.75 +0.7
770,304 + 14793 mRNA_6425 0.87 +0.4
770,309 + 14793 mRNA_6425 0.87 -0.6
770,342 - +0.2
770,348 + +0.3
770,507 + -0.2
770,642 + +0.4
770,642 - +0.1
770,664 - -0.1
770,668 - -0.5
773,185 + -0.0
773,304 - +1.4
773,440 - +0.2
773,460 + +0.7
773,547 - +1.0

Or see this region's nucleotide sequence