Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6443

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14810 and 14811 are separated by 414 nucleotides14811 and 14812 are separated by 630 nucleotides mRNA_6442: 14810 - Hypothetical Protein, at 805,308 to 806,483 14810 mRNA_6443: 14811 - K10427 DCTN5 dynactin 5, at 806,898 to 807,775 14811 mRNA_6444: 14812 - Hypothetical Protein, at 808,406 to 809,831 14812

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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805,960 + 14810 mRNA_6442 0.55 +2.3
805,990 + 14810 mRNA_6442 0.58 -0.2
806,061 + 14810 mRNA_6442 0.64 +0.7
806,130 - 14810 mRNA_6442 0.70 +0.1
806,281 + 14810 mRNA_6442 0.83 +0.0
806,515 + +1.0
806,651 - -0.6
806,658 + -0.1
806,669 + +0.0
806,771 + +0.5
806,804 - -0.3
807,360 - 14811 mRNA_6443 0.53 -1.0
808,173 - +0.8
808,265 + -0.6
808,321 + -0.5
808,383 - -0.3
808,401 + +0.8
808,412 + -0.3
808,422 - +0.4
808,439 + +1.0
808,534 - -2.0
808,560 - 14812 mRNA_6444 0.11 +0.1
808,561 + 14812 mRNA_6444 0.11 -0.1
808,699 + 14812 mRNA_6444 0.21 -0.4
808,706 + 14812 mRNA_6444 0.21 +1.4
808,706 + 14812 mRNA_6444 0.21 +0.6

Or see this region's nucleotide sequence