Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6462

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14829 and 14830 are separated by 487 nucleotides mRNA_6461: 14829 - Hypothetical Protein, at 839,860 to 840,668 14829 mRNA_6462: 14830 - Hypothetical Protein, at 841,156 to 842,746 14830

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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840,278 - 14829 mRNA_6461 0.52 +0.0
840,303 - 14829 mRNA_6461 0.55 -0.4
840,312 + 14829 mRNA_6461 0.56 -1.6
840,313 - 14829 mRNA_6461 0.56 -0.0
840,442 - 14829 mRNA_6461 0.72 +0.2
840,455 + 14829 mRNA_6461 0.74 +0.2
840,695 + +1.6
840,756 + -0.2
840,857 - +0.1
840,908 - +0.4
840,913 + +0.7
841,029 - +1.9
841,132 - +0.1
841,194 + -0.1
841,197 + +0.1
841,329 + 14830 mRNA_6462 0.11 -0.0
841,491 + 14830 mRNA_6462 0.21 +1.5
841,631 + 14830 mRNA_6462 0.30 -0.9
841,986 - 14830 mRNA_6462 0.52 -0.4
842,083 - 14830 mRNA_6462 0.58 -0.2
842,193 + 14830 mRNA_6462 0.65 +0.2
842,367 + 14830 mRNA_6462 0.76 -1.2
842,478 - 14830 mRNA_6462 0.83 +0.8
842,925 - +0.2
842,927 - +0.3
842,940 - +0.7
842,948 + +1.2
843,066 - +0.7
843,218 + +2.3
843,355 + -1.0
843,514 + -0.4
843,515 + +0.6
843,515 + -0.1
843,523 - -0.2
843,534 - +0.9
843,539 - -1.2
843,670 + -0.1
843,685 + -0.3
843,685 + -0.3

Or see this region's nucleotide sequence