Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6464

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14831 and 14832 are separated by 169 nucleotides14832 and 14833 are separated by 157 nucleotides mRNA_6463: 14831 - K10427 DCTN5 dynactin 5, at 844,164 to 845,248 14831 mRNA_6464: 14832 - KOG1609 Protein involved in mRNA turnover and stability, at 845,418 to 846,912 14832 mRNA_6465: 14833 - Hypothetical Protein, at 847,070 to 847,704 14833

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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845,077 - 14831 mRNA_6463 0.84 +0.9
845,228 - +0.2
845,342 + +0.2
845,344 + -1.2
845,496 + +0.9
845,506 - -0.4
845,511 + +2.0
845,660 - 14832 mRNA_6464 0.16 -0.3
845,662 + 14832 mRNA_6464 0.16 +0.7
845,796 + 14832 mRNA_6464 0.25 +0.2
846,116 + 14832 mRNA_6464 0.47 -0.0
846,203 - 14832 mRNA_6464 0.53 -0.4
846,484 - 14832 mRNA_6464 0.71 +0.1
846,502 - 14832 mRNA_6464 0.73 +0.7
846,511 + 14832 mRNA_6464 0.73 +1.6
846,635 - 14832 mRNA_6464 0.81 +0.7
846,650 - 14832 mRNA_6464 0.82 -0.1
846,653 - 14832 mRNA_6464 0.83 -0.2
846,661 + 14832 mRNA_6464 0.83 -0.3
846,675 + 14832 mRNA_6464 0.84 -0.2
846,806 + +0.1
846,811 + -0.1
846,828 + +1.0
847,056 + -1.4
847,494 + 14833 mRNA_6465 0.67 +0.5
847,494 - 14833 mRNA_6465 0.67 +0.4
847,530 + 14833 mRNA_6465 0.72 -0.5
847,575 + 14833 mRNA_6465 0.80 +1.1
847,634 + 14833 mRNA_6465 0.89 +1.6
847,820 + -0.8
847,867 - +0.6

Or see this region's nucleotide sequence