Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6467

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14834 and 14835 are separated by 294 nucleotides14835 and 14836 are separated by 482 nucleotides mRNA_6466: 14834 - Hypothetical Protein, at 848,394 to 849,782 14834 mRNA_6467: 14835 - K20242 EVI5 ecotropic viral integration site 5 protein, at 850,077 to 853,413 14835 mRNA_6468: 14836 - K05012 CLCN3_4_5 chloride channel 3/4/5, at 853,896 to 857,931 14836

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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849,270 - 14834 mRNA_6466 0.63 +0.1
849,282 - 14834 mRNA_6466 0.64 -0.1
849,283 + 14834 mRNA_6466 0.64 +0.2
849,424 + 14834 mRNA_6466 0.74 +0.5
849,550 - 14834 mRNA_6466 0.83 +0.6
849,555 - 14834 mRNA_6466 0.84 -1.5
849,687 + -0.3
849,694 - +0.7
849,715 + -0.5
849,723 + -0.1
849,832 - -0.7
849,860 - +0.7
849,871 - +0.5
849,877 - +0.8
849,988 + +0.3
849,989 - -0.6
849,999 - +0.2
849,999 - -1.1
850,005 - +0.6
850,007 - -0.4
850,018 + +0.4
850,019 + +0.1
850,026 + -0.4
850,029 - +0.7
850,033 + +0.6
850,035 - -2.3
850,145 - -0.3
850,151 - +0.3
850,157 + -0.3
850,180 - -0.1
850,186 + +0.4
850,319 + +0.1
850,330 + +0.3
850,338 + +0.3
850,446 - 14835 mRNA_6467 0.11 +0.4
850,599 - 14835 mRNA_6467 0.16 -1.2
850,747 - 14835 mRNA_6467 0.20 -0.5
850,870 + 14835 mRNA_6467 0.24 +0.1
850,873 - 14835 mRNA_6467 0.24 -1.5
851,384 + 14835 mRNA_6467 0.39 -0.1
851,600 - 14835 mRNA_6467 0.46 +0.8
851,817 + 14835 mRNA_6467 0.52 +0.2
851,870 + 14835 mRNA_6467 0.54 -0.6
851,876 - 14835 mRNA_6467 0.54 -0.3
852,013 + 14835 mRNA_6467 0.58 -0.2
852,016 - 14835 mRNA_6467 0.58 +0.0
852,056 - 14835 mRNA_6467 0.59 +0.9
852,333 - 14835 mRNA_6467 0.68 -0.4
852,615 - 14835 mRNA_6467 0.76 -0.2
852,648 - 14835 mRNA_6467 0.77 +0.2
853,044 + 14835 mRNA_6467 0.89 +1.0
853,284 + -0.0
853,354 + +0.4
853,377 - -0.8
853,382 + -0.6
853,455 + -0.3
853,586 - +1.1
853,589 - -1.6
853,797 - +0.6
853,911 - +0.1
854,032 - +0.4
854,083 + +0.6
854,320 - 14836 mRNA_6468 0.11 -0.3

Or see this region's nucleotide sequence