Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6489

Experiment: 40 hrs Low Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14856 and 14857 are separated by 394 nucleotides14857 and 14858 are separated by 359 nucleotides mRNA_6488: 14856 - K01655 LYS21, LYS20 homocitrate synthase, at 905,172 to 907,549 14856 mRNA_6489: 14857 - KOG0327 Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases, at 907,944 to 911,303 14857 mRNA_6490: 14858 - KOG1698 Mitochondrial/chloroplast ribosomal protein L19, at 911,663 to 912,456 14858

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
remove
907,277 - 14856 mRNA_6488 0.89 -1.1
907,654 + -0.4
907,770 + -0.5
907,797 - +0.1
907,831 + +1.4
907,895 - +0.2
908,062 - +0.8
908,078 + +0.1
908,123 - +0.2
908,235 - +0.3
908,378 + 14857 mRNA_6489 0.13 +1.3
908,770 - 14857 mRNA_6489 0.25 +0.6
908,897 - 14857 mRNA_6489 0.28 -0.2
909,029 + 14857 mRNA_6489 0.32 +0.4
909,061 + 14857 mRNA_6489 0.33 +0.9
909,124 + 14857 mRNA_6489 0.35 +0.1
909,247 - 14857 mRNA_6489 0.39 +0.1
909,327 - 14857 mRNA_6489 0.41 +0.1
909,966 + 14857 mRNA_6489 0.60 +0.7
910,010 - 14857 mRNA_6489 0.61 -0.3
910,022 + 14857 mRNA_6489 0.62 +0.4
910,047 - 14857 mRNA_6489 0.63 -0.1
910,115 - 14857 mRNA_6489 0.65 +0.6
910,124 + 14857 mRNA_6489 0.65 -0.2
910,251 - 14857 mRNA_6489 0.69 +0.1
910,351 - 14857 mRNA_6489 0.72 -0.5
910,824 + 14857 mRNA_6489 0.86 -0.1
911,132 - +0.0
911,228 + +0.4
911,263 - +0.2
911,264 - +0.1
911,566 - +0.2
911,661 - -0.6

Or see this region's nucleotide sequence