Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6512

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14879 and 14880 are separated by 700 nucleotides mRNA_6511: 14879 - KOG1061 Vesicle coat complex AP-1/AP-2/AP-4, beta subunit, at 957,462 to 960,234 14879 mRNA_6512: 14880 - KOG1089 Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6, at 960,935 to 963,520 14880

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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960,103 - -0.2
960,103 - -0.2
960,103 - -2.8
960,109 + -0.5
960,185 + +2.3
960,203 - -0.9
960,204 + +0.2
960,207 - -0.4
960,217 + -1.6
960,363 - -1.0
960,525 - +0.4
960,639 + +0.2
960,663 + +1.6
960,696 + +0.5
960,791 + +1.0
960,797 - -0.6
960,825 + +2.0
960,839 + +0.8
960,942 + +0.3
961,398 - 14880 mRNA_6512 0.18 +0.3
961,739 - 14880 mRNA_6512 0.31 +2.6
961,835 - 14880 mRNA_6512 0.35 -0.8
962,115 - 14880 mRNA_6512 0.46 +0.3
962,118 + 14880 mRNA_6512 0.46 +0.5
962,245 + 14880 mRNA_6512 0.51 -0.3
962,262 - 14880 mRNA_6512 0.51 +2.2
962,697 + 14880 mRNA_6512 0.68 -0.3
962,701 + 14880 mRNA_6512 0.68 -0.5
962,867 + 14880 mRNA_6512 0.75 +0.2
963,151 + 14880 mRNA_6512 0.86 -0.3
963,151 + 14880 mRNA_6512 0.86 +0.4
963,167 - 14880 mRNA_6512 0.86 +0.0
963,436 - +0.8
963,695 + -0.5
963,756 + +0.4
963,829 - -0.0
963,859 - +1.6
963,888 - +0.2
963,990 + -0.4
964,433 - +2.1
964,512 - +0.5

Or see this region's nucleotide sequence