Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6517

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14884 and 14885 are separated by 262 nucleotides14885 and 14886 are separated by 123 nucleotides mRNA_6516: 14884 - Hypothetical Protein, at 974,162 to 975,105 14884 mRNA_6517: 14885 - K12879 THOC2 THO complex subunit 2, at 975,368 to 982,291 14885 mRNA_6518: 14886 - K05712 mhpA 3-(3-hydroxy-phenyl)propionate hydroxylase, at 982,415 to 984,966 14886

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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974,485 + 14884 mRNA_6516 0.34 +0.3
974,624 + 14884 mRNA_6516 0.49 -1.0
974,640 + 14884 mRNA_6516 0.51 +1.9
975,058 - +0.1
975,295 - +0.1
975,309 - -0.2
975,333 + +0.4
975,491 - +2.0
976,057 - +0.7
981,565 - 14885 mRNA_6517 0.90 -0.4
982,082 - +0.5
982,684 + 14886 mRNA_6518 0.11 -0.4
982,845 + 14886 mRNA_6518 0.17 +0.0

Or see this region's nucleotide sequence