Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6536

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14903 and 14904 are separated by 393 nucleotides14904 and 14905 are separated by 191 nucleotides mRNA_6535: 14903 - KOG0715 Molecular chaperone (DnaJ superfamily), at 1,022,471 to 1,023,493 14903 mRNA_6536: 14904 - HMMPfam-Protein of unknown function (DUF837)-PF05769, at 1,023,887 to 1,025,304 14904 mRNA_6537: 14905 - Hypothetical Protein, at 1,025,496 to 1,027,566 14905

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,023,115 - 14903 mRNA_6535 0.63 +0.2
1,023,260 - 14903 mRNA_6535 0.77 +0.2
1,023,547 + -0.3
1,023,568 + +0.2
1,023,670 - +0.2
1,023,691 + +0.3
1,023,697 - +0.0
1,023,699 - +1.2
1,023,725 + -0.1
1,023,800 - -0.1
1,023,849 - +0.8
1,023,865 + +0.4
1,023,868 + +0.1
1,023,884 + +0.2
1,024,198 + 14904 mRNA_6536 0.22 +0.6
1,024,705 - 14904 mRNA_6536 0.58 +0.1
1,024,900 + 14904 mRNA_6536 0.71 +0.4
1,024,954 + 14904 mRNA_6536 0.75 -2.4
1,025,021 + 14904 mRNA_6536 0.80 +0.3
1,025,024 - 14904 mRNA_6536 0.80 +0.4
1,025,290 + +0.0
1,025,316 - +0.2
1,025,417 + -0.3
1,025,418 - +0.1
1,025,497 - -0.6
1,025,507 - +0.2
1,025,509 - -0.6
1,025,518 - -0.3
1,025,531 - +0.1
1,025,599 - -0.0

Or see this region's nucleotide sequence