Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6554

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14921 and 14922 are separated by 966 nucleotides14922 and 14923 are separated by 880 nucleotides mRNA_6553: 14921 - SUPERFAMILY--SSF52266, at 1,077,741 to 1,079,727 14921 mRNA_6554: 14922 - K15258 PARP6_8 poly [ADP-ribose] polymerase 6/8, at 1,080,694 to 1,084,243 14922 mRNA_6555: 14923 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 1,085,124 to 1,086,396 14923

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,079,783 - -0.4
1,079,790 - +0.9
1,079,791 + +0.9
1,079,803 - -0.0
1,079,822 - -1.2
1,079,837 + +0.1
1,079,942 - +0.5
1,079,943 - +0.3
1,079,954 - -0.1
1,079,954 - -0.4
1,079,957 + -0.7
1,079,963 - +0.4
1,079,967 + +0.1
1,079,967 + +0.2
1,079,970 + +0.3
1,079,975 - +2.0
1,079,977 - +0.4
1,079,979 + +0.4
1,080,147 + -0.6
1,080,151 + -0.4
1,080,159 + -0.2
1,080,424 + -0.0
1,080,584 + +0.6
1,081,294 + 14922 mRNA_6554 0.17 -0.6
1,081,603 - 14922 mRNA_6554 0.26 -0.0
1,081,881 - 14922 mRNA_6554 0.33 +0.0
1,082,772 - 14922 mRNA_6554 0.59 +0.2
1,083,223 - 14922 mRNA_6554 0.71 +0.7
1,083,230 + 14922 mRNA_6554 0.71 -0.3
1,083,365 + 14922 mRNA_6554 0.75 -0.2
1,083,694 - 14922 mRNA_6554 0.85 -0.5
1,083,814 + 14922 mRNA_6554 0.88 +0.3
1,083,815 - 14922 mRNA_6554 0.88 -0.0
1,084,260 + -0.4
1,084,270 - -0.0
1,084,283 - +1.3
1,084,424 - -0.5
1,084,456 + -0.8
1,084,558 - -1.1
1,084,574 - +0.2
1,084,580 + +0.6
1,084,586 - +0.0
1,084,726 - +0.1
1,084,859 - +0.6
1,084,866 - -0.7
1,084,882 + +0.2
1,084,885 + -0.1
1,084,896 + -2.3
1,085,016 + -0.2
1,085,020 + +0.3
1,085,022 + -0.2
1,085,024 + -0.1
1,085,184 - +0.2
1,085,189 - -0.1
1,085,205 - -0.1

Or see this region's nucleotide sequence