Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6568

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14935 and 14936 are separated by 458 nucleotides mRNA_6567: 14935 - KOG2662 Magnesium transporters CorA family, at 1,114,168 to 1,116,354 14935 mRNA_6568: 14936 - BLAST Protein IWS1 homolog A [Rhizoctonia solani], at 1,116,813 to 1,120,702 14936

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,115,881 + 14935 mRNA_6567 0.78 +0.0
1,116,121 - 14935 mRNA_6567 0.89 -0.3
1,116,152 + +0.3
1,116,153 + -0.0
1,116,286 - -1.9
1,116,291 + +0.1
1,116,299 - -0.1
1,116,438 - +1.0
1,116,441 - -0.6
1,116,750 + +0.2
1,116,755 - -0.2
1,116,775 - -2.0
1,119,163 + 14936 mRNA_6568 0.60 +1.0
1,120,815 - -0.1
1,120,931 - -0.5
1,121,115 - +0.0
1,121,402 - +0.4
1,121,410 + +0.7
1,121,529 + -0.2
1,121,563 - -0.0
1,121,579 - -0.4
1,121,670 - -1.5
1,121,689 - +0.0
1,121,698 + -1.9

Or see this region's nucleotide sequence