Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6604

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14971 and 14972 are separated by 214 nucleotides14972 and 14973 are separated by 357 nucleotides mRNA_6603: 14971 - K02149 ATPeV1D, ATP6M V-type H+-transporting ATPase subunit D, at 1,208,828 to 1,210,295 14971 mRNA_6604: 14972 - K12812 UAP56, BAT1, SUB2 ATP-dependent RNA helicase UAP56/SUB2, at 1,210,510 to 1,213,080 14972 mRNA_6605: 14973 - KOG2177 Predicted E3 ubiquitin ligase, at 1,213,438 to 1,216,130 14973

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,212,429 - 14972 mRNA_6604 0.75 +1.0
1,213,231 - +0.4
1,213,248 - -0.4
1,213,386 + +1.0
1,213,537 - +0.6
1,213,687 - -0.7
1,213,837 + 14973 mRNA_6605 0.15 +0.7
1,213,989 - 14973 mRNA_6605 0.20 -1.0

Or see this region's nucleotide sequence