Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6620

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14987 and 14988 are separated by 564 nucleotides14988 and 14989 are separated by 560 nucleotides mRNA_6619: 14987 - KOG0092 GTPase Rab5/YPT51 and related small G protein superfamily GTPases, at 1,264,449 to 1,266,706 14987 mRNA_6620: 14988 - K02935 RP-L7, MRPL12, rplL large subunit ribosomal protein L7/L12, at 1,267,271 to 1,267,860 14988 mRNA_6621: 14989 - Hypothetical Protein, at 1,268,421 to 1,270,121 14989

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,266,489 + -0.2
1,266,732 + +0.9
1,266,894 - -0.1
1,267,078 + +0.9
1,268,196 - +0.1
1,268,209 + +1.6
1,268,216 - +0.1
1,268,249 - +0.1
1,268,385 - +0.4
1,268,498 - +0.1
1,268,513 + -0.8

Or see this region's nucleotide sequence