Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6646

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15013 and 15014 are separated by 358 nucleotides15014 and 15015 are separated by 259 nucleotides mRNA_6645: 15013 - HMMPfam-GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p-PF13839, at 1,335,554 to 1,337,313 15013 mRNA_6646: 15014 - K14647 vpr minor extracellular serine protease Vpr, at 1,337,672 to 1,341,391 15014 mRNA_6647: 15015 - HMMPfam-Peroxisomal biogenesis factor 11 (PEX11)-PF05648, at 1,341,651 to 1,342,937 15015

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,337,066 - 15013 mRNA_6645 0.86 +0.4
1,337,100 + 15013 mRNA_6645 0.88 -0.1
1,337,179 + -0.1
1,337,225 + -0.3
1,337,500 + +0.6
1,337,509 + -1.3
1,337,545 - -0.2
1,337,553 + +0.6
1,337,636 + -0.2
1,337,812 + -0.4
1,337,954 + -0.9
1,338,256 - 15014 mRNA_6646 0.16 -1.2
1,338,515 + 15014 mRNA_6646 0.23 -0.1
1,338,553 + 15014 mRNA_6646 0.24 +0.1
1,338,565 - 15014 mRNA_6646 0.24 +1.0
1,338,750 + 15014 mRNA_6646 0.29 -1.1
1,338,829 - 15014 mRNA_6646 0.31 -0.8
1,338,963 - 15014 mRNA_6646 0.35 +0.0
1,339,109 + 15014 mRNA_6646 0.39 -0.3
1,339,575 - 15014 mRNA_6646 0.51 -1.7
1,339,707 + 15014 mRNA_6646 0.55 -0.7
1,339,709 + 15014 mRNA_6646 0.55 +0.7
1,339,742 - 15014 mRNA_6646 0.56 +0.7
1,339,853 - 15014 mRNA_6646 0.59 +0.5
1,339,856 - 15014 mRNA_6646 0.59 -1.1
1,339,887 + 15014 mRNA_6646 0.60 -0.3
1,340,154 + 15014 mRNA_6646 0.67 -1.8
1,340,197 + 15014 mRNA_6646 0.68 -0.8
1,340,301 + 15014 mRNA_6646 0.71 +0.5
1,340,312 + 15014 mRNA_6646 0.71 -0.8
1,340,320 - 15014 mRNA_6646 0.71 +0.4
1,340,638 - 15014 mRNA_6646 0.80 -0.1
1,340,643 - 15014 mRNA_6646 0.80 +0.6
1,340,700 - 15014 mRNA_6646 0.81 +0.6
1,340,708 + 15014 mRNA_6646 0.82 +0.9
1,341,045 - -0.4
1,341,216 + -0.2
1,341,343 - +0.6
1,341,354 + -0.4
1,341,489 + +0.4
1,341,491 + +0.8
1,341,502 + +0.0
1,341,528 - +0.8
1,341,530 - -0.2
1,341,559 - +1.1
1,341,583 + +0.2
1,341,611 - -0.5
1,341,616 + +0.5
1,341,618 + +0.2
1,341,655 - +1.1
1,341,763 + -0.3
1,341,785 - 15015 mRNA_6647 0.10 -0.2
1,341,819 - 15015 mRNA_6647 0.13 +0.7
1,341,934 + 15015 mRNA_6647 0.22 -0.4
1,342,200 - 15015 mRNA_6647 0.43 +1.5

Or see this region's nucleotide sequence