Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6660

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15027 and 15028 are separated by 691 nucleotides15028 and 15029 are separated by 69 nucleotides mRNA_6659: 15027 - K05663 ABC.ATM mitochondrial ABC transporter ATM, at 1,370,693 to 1,373,174 15027 mRNA_6660: 15028 - KOG1342 Histone deacetylase complex, catalytic component RPD3, at 1,373,866 to 1,375,485 15028 mRNA_6661: 15029 - K11699 RDR, RDRP RNA-dependent RNA polymerase, at 1,375,555 to 1,377,901 15029

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,373,375 - -3.2
1,373,648 - -1.6
1,373,660 - +0.0
1,373,819 + -0.2
1,373,837 - +0.5
1,373,838 + -0.1
1,373,854 + +0.3
1,373,927 + -1.1
1,373,951 - -0.1
1,373,959 - +0.1
1,373,987 - +0.2
1,373,993 + -0.5
1,373,993 + -1.8
1,374,227 + 15028 mRNA_6660 0.22 -0.1
1,374,272 + 15028 mRNA_6660 0.25 +0.9
1,374,289 + 15028 mRNA_6660 0.26 +0.5
1,374,303 - 15028 mRNA_6660 0.27 +0.4
1,374,432 + 15028 mRNA_6660 0.35 -0.5
1,374,701 - 15028 mRNA_6660 0.52 +0.2
1,374,859 - 15028 mRNA_6660 0.61 -0.4
1,375,106 - 15028 mRNA_6660 0.77 +1.5
1,375,194 - 15028 mRNA_6660 0.82 -0.1
1,375,517 + +0.8
1,376,168 - 15029 mRNA_6661 0.26 -0.4
1,376,291 + 15029 mRNA_6661 0.31 -0.0
1,376,452 + 15029 mRNA_6661 0.38 -0.3

Or see this region's nucleotide sequence