Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6661

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15028 and 15029 are separated by 69 nucleotides mRNA_6660: 15028 - KOG1342 Histone deacetylase complex, catalytic component RPD3, at 1,373,866 to 1,375,485 15028 mRNA_6661: 15029 - K11699 RDR, RDRP RNA-dependent RNA polymerase, at 1,375,555 to 1,377,901 15029

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,374,701 - 15028 mRNA_6660 0.52 +0.2
1,374,859 - 15028 mRNA_6660 0.61 -0.4
1,375,106 - 15028 mRNA_6660 0.77 +1.5
1,375,194 - 15028 mRNA_6660 0.82 -0.1
1,375,517 + +0.8
1,376,168 - 15029 mRNA_6661 0.26 -0.4
1,376,291 + 15029 mRNA_6661 0.31 -0.0
1,376,452 + 15029 mRNA_6661 0.38 -0.3
1,376,499 + 15029 mRNA_6661 0.40 +0.5
1,376,568 + 15029 mRNA_6661 0.43 -0.4
1,376,879 - 15029 mRNA_6661 0.56 -0.1
1,377,050 - 15029 mRNA_6661 0.64 +0.1
1,377,064 + 15029 mRNA_6661 0.64 +0.9
1,377,276 + 15029 mRNA_6661 0.73 +0.2
1,377,310 - 15029 mRNA_6661 0.75 -0.3
1,377,322 + 15029 mRNA_6661 0.75 +0.8
1,377,485 + 15029 mRNA_6661 0.82 -1.3
1,377,765 + +0.9
1,377,766 - -2.5
1,378,224 - -0.4
1,378,306 + +0.1
1,378,308 + -0.1
1,378,381 + -1.4
1,378,547 + -0.1
1,378,652 + -1.0
1,378,688 + -0.2
1,378,780 - +0.6
1,378,822 - +0.6
1,378,822 - -0.1

Or see this region's nucleotide sequence