Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6693

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15060 and 15061 are separated by 252 nucleotides15061 and 15062 are separated by 218 nucleotides mRNA_6692: 15060 - KOG3888 Gamma-butyrobetaine,2-oxoglutarate dioxygenase, at 1,456,937 to 1,457,982 15060 mRNA_6693: 15061 - HMMPfam-Afadin- and alpha -actinin-Binding-PF11559, at 1,458,235 to 1,460,963 15061 mRNA_6694: 15062 - Hypothetical Protein, at 1,461,182 to 1,464,230 15062

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,457,941 + -0.1
1,458,234 - -0.8
1,458,240 - +0.4
1,458,250 + -0.9
1,458,273 - +0.4
1,458,431 + -1.4
1,458,561 + 15061 mRNA_6693 0.12 +0.4
1,458,596 - 15061 mRNA_6693 0.13 -0.1
1,458,774 - 15061 mRNA_6693 0.20 +0.1
1,458,819 - 15061 mRNA_6693 0.21 +0.5
1,459,282 + 15061 mRNA_6693 0.38 +1.1
1,459,375 + 15061 mRNA_6693 0.42 +0.1
1,459,421 + 15061 mRNA_6693 0.43 -0.4
1,459,432 - 15061 mRNA_6693 0.44 -0.6
1,459,583 - 15061 mRNA_6693 0.49 +0.5
1,460,009 + 15061 mRNA_6693 0.65 -0.6
1,460,276 + 15061 mRNA_6693 0.75 -0.1
1,460,459 + 15061 mRNA_6693 0.81 -0.3
1,460,566 - 15061 mRNA_6693 0.85 +0.4
1,460,699 - -0.2
1,460,721 + +0.1
1,461,007 - +0.1

Or see this region's nucleotide sequence