Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6697

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15064 and 15065 are separated by 540 nucleotides15065 and 15066 are separated by 350 nucleotides mRNA_6696: 15064 - KOG3519 Invasion-inducing protein TIAM1/CDC24 and related RhoGEF GTPases, at 1,467,574 to 1,471,494 15064 mRNA_6697: 15065 - K07188 LIPE, HSL hormone-sensitive lipase, at 1,472,035 to 1,475,787 15065 mRNA_6698: 15066 - K00819 rocD, OAT ornithine--oxo-acid transaminase, at 1,476,138 to 1,478,780 15066

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,471,106 + -1.3
1,471,122 - -0.1
1,471,233 + -0.2
1,471,282 - -1.2
1,471,296 + +0.2
1,471,426 + +1.4
1,471,435 - +0.4
1,471,563 + +0.0
1,471,565 - +0.7
1,471,624 - -0.4
1,471,713 - -0.3
1,471,722 - +0.3
1,471,727 + -1.6
1,471,727 - -0.3
1,471,728 - -0.1
1,471,739 + -0.3
1,471,742 - +1.4
1,471,744 - +0.0
1,471,752 - -0.4
1,471,892 - +0.2
1,471,911 - +0.3
1,471,920 + -0.8
1,472,499 - 15065 mRNA_6697 0.12 -0.4
1,472,724 - 15065 mRNA_6697 0.18 -0.1
1,472,764 - 15065 mRNA_6697 0.19 +0.1
1,472,900 - 15065 mRNA_6697 0.23 +0.6
1,472,934 - 15065 mRNA_6697 0.24 -0.3
1,473,062 - 15065 mRNA_6697 0.27 +1.3
1,473,083 - 15065 mRNA_6697 0.28 +0.0
1,473,198 + 15065 mRNA_6697 0.31 -0.2
1,473,383 + 15065 mRNA_6697 0.36 -0.4
1,473,559 + 15065 mRNA_6697 0.41 -0.1
1,473,685 + 15065 mRNA_6697 0.44 +0.9
1,473,787 - 15065 mRNA_6697 0.47 -0.4
1,474,258 - 15065 mRNA_6697 0.59 +0.4
1,474,382 - 15065 mRNA_6697 0.63 +0.2
1,474,402 - 15065 mRNA_6697 0.63 -0.4
1,474,411 - 15065 mRNA_6697 0.63 +0.4
1,474,531 - 15065 mRNA_6697 0.67 -0.5
1,474,540 + 15065 mRNA_6697 0.67 -0.3
1,474,547 + 15065 mRNA_6697 0.67 -0.4
1,474,686 + 15065 mRNA_6697 0.71 -0.7
1,474,690 + 15065 mRNA_6697 0.71 -0.9
1,474,853 - 15065 mRNA_6697 0.75 -0.1
1,475,245 + 15065 mRNA_6697 0.86 +1.2
1,475,412 + +0.0
1,475,421 - +0.1
1,475,453 + -1.0
1,475,552 - -0.4
1,475,560 + +0.0
1,475,561 + -0.0
1,475,568 + +1.9
1,475,591 + +0.2
1,475,684 - -0.1
1,475,719 - +0.4
1,475,879 + -0.6
1,475,889 + -0.4
1,475,894 - +0.1
1,475,932 - +1.3
1,475,938 - -0.2
1,475,944 + +0.3
1,476,041 - +0.4
1,476,044 - -0.2
1,476,085 + +0.3
1,476,196 + +1.4
1,476,196 + -0.4
1,476,319 + -1.8
1,476,359 - +0.4
1,476,486 + 15066 mRNA_6698 0.13 +0.1
1,476,490 + 15066 mRNA_6698 0.13 +2.1

Or see this region's nucleotide sequence