Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6713

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15080 and 15081 are separated by 444 nucleotides15081 and 15082 are separated by 929 nucleotides mRNA_6712: 15080 - Hypothetical Protein, at 1,515,037 to 1,516,123 15080 mRNA_6713: 15081 - HMMPfam-RTA1 like protein-PF04479, at 1,516,568 to 1,518,041 15081 mRNA_6714: 15082 - HMMPfam-Inhibitor of Apoptosis domain-PF00653,ProSiteProfiles-BIR repeat profile.-PS50143,SMART-Baculoviral inhibition of apoptosis protein repeat-SM00238,SUPERFAMILY--SSF57924, at 1,518,971 to 1,519,735 15082

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,515,680 + 15080 mRNA_6712 0.59 +0.2
1,515,974 - 15080 mRNA_6712 0.86 -1.1
1,515,984 + 15080 mRNA_6712 0.87 -0.4
1,516,287 + -0.0
1,516,585 - +1.8
1,516,718 + 15081 mRNA_6713 0.10 +1.4
1,516,746 + 15081 mRNA_6713 0.12 -1.0
1,517,053 + 15081 mRNA_6713 0.33 +0.2
1,517,181 - 15081 mRNA_6713 0.42 -0.7
1,517,198 - 15081 mRNA_6713 0.43 -0.0
1,517,476 + 15081 mRNA_6713 0.62 -0.2
1,517,622 - 15081 mRNA_6713 0.72 -0.1
1,517,678 - 15081 mRNA_6713 0.75 -0.5
1,517,795 + 15081 mRNA_6713 0.83 +1.2
1,517,909 - +0.2
1,518,182 - +1.0
1,518,331 + +0.3
1,518,332 - +0.4
1,518,379 - +0.1
1,518,455 + -2.7
1,518,505 + -0.3
1,518,508 - +0.4
1,518,508 - -1.2
1,518,508 - -1.2
1,518,509 + -0.3
1,518,519 - -0.4
1,518,631 - -0.0
1,518,634 - +0.9
1,518,638 - +1.5
1,518,651 + +1.1
1,518,662 + +0.6
1,518,664 - +0.3
1,518,675 + +0.4
1,518,684 - -0.8
1,518,685 + +0.0

Or see this region's nucleotide sequence