Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6728

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15095 and 15096 are separated by 343 nucleotides15096 and 15097 are separated by 291 nucleotides mRNA_6727: 15095 - K00761 upp, UPRT uracil phosphoribosyltransferase, at 3,595 to 4,704 15095 mRNA_6728: 15096 - K14309 NUP93, NIC96 nuclear pore complex protein Nup93, at 5,048 to 8,579 15096 mRNA_6729: 15097 - HMMPfam-Putative GTPase activating protein for Arf-PF01412,PRINTS-HIV Rev interacting protein signature-PR00405,ProSiteProfiles-ARF GTPase-activating proteins domain profile.-PS50115,SMART-Putative GTP-ase activating proteins for the small GTPase, ARF-SM00105,SUPERFAMILY--SSF57863, at 8,871 to 11,490 15097

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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4,612 - -1.3
4,639 + -1.0
4,774 - +0.4
4,889 - +0.7
4,914 + -0.1
4,918 - +0.3
4,980 - -0.2
5,104 + -1.3
5,529 - 15096 mRNA_6728 0.14 -0.2
6,118 - 15096 mRNA_6728 0.30 -1.1
6,283 - 15096 mRNA_6728 0.35 +0.0
8,663 - -0.7
9,084 - +0.6
9,541 - 15097 mRNA_6729 0.26 -0.3

Or see this region's nucleotide sequence