Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6780

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15147 and 15148 are separated by 38 nucleotides15148 and 15149 are separated by 250 nucleotides15149 and 15150 are separated by 81 nucleotides mRNA_6779: 15147 - K10998 CSM3, SWI3 replication fork protection complex subunit Csm3/Swi3, at 114,744 to 115,894 15147 mRNA_6780: 15148 - KOG4288 Predicted oxidoreductase, at 115,933 to 117,029 15148 mRNA_6781: 15149 - Hypothetical Protein, at 117,280 to 117,859 15149 mRNA_6782: 15150 - HMMPfam-Man1-Src1p-C-terminal domain-PF09402,HMMPfam-HeH/LEM domain-PF12949, at 117,941 to 121,019 15150

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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115,764 + 15147 mRNA_6779 0.89 +0.5
117,211 + -0.8
117,214 + -0.1
117,215 - -0.2
117,221 + +0.4
117,221 + -0.7
117,240 - -0.9
117,254 + +0.0
117,809 - +0.1

Or see this region's nucleotide sequence