Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6794

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15161 and 15162 are separated by 316 nucleotides15162 and 15163 are separated by 104 nucleotides mRNA_6793: 15161 - KOG2375 Protein interacting with poly(A)-binding protein, at 144,793 to 148,155 15161 mRNA_6794: 15162 - K10773 NTH endonuclease III, at 148,472 to 150,085 15162 mRNA_6795: 15163 - KOG3548 DNA damage checkpoint protein RHP9/CRB2/53BP1, at 150,190 to 154,769 15163

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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147,518 - 15161 mRNA_6793 0.81 +0.3
147,817 + 15161 mRNA_6793 0.90 +0.4
148,254 - +1.7
148,270 + +0.6
148,370 - +0.4
148,401 - +0.2
148,421 - -0.2
148,545 - +0.2
148,546 + -0.4
148,698 - 15162 mRNA_6794 0.14 +1.9
148,700 - 15162 mRNA_6794 0.14 -1.2
149,032 + 15162 mRNA_6794 0.35 +0.3
149,257 - 15162 mRNA_6794 0.49 +0.7
149,551 - 15162 mRNA_6794 0.67 -0.2
149,796 - 15162 mRNA_6794 0.82 -0.3
149,852 + 15162 mRNA_6794 0.86 +0.0
150,009 - +0.2
150,133 + -1.1
150,138 + -0.3
150,151 - -0.8
150,282 - +0.6
150,296 + -2.2
150,417 + -0.1
150,469 - +1.3
150,608 + -0.4
150,864 - 15163 mRNA_6795 0.15 +1.2
150,895 - 15163 mRNA_6795 0.15 +0.1
151,027 - 15163 mRNA_6795 0.18 -0.2
151,051 - 15163 mRNA_6795 0.19 +0.5

Or see this region's nucleotide sequence