Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6803

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15170 and 15171 are separated by 91 nucleotides15171 and 15172 are separated by 173 nucleotides mRNA_6802: 15170 - Hypothetical Protein, at 170,561 to 172,312 15170 mRNA_6803: 15171 - KOG3131 Uncharacterized conserved protein, at 172,404 to 173,557 15171 mRNA_6804: 15172 - HMMPfam-CFEM domain-PF05730, at 173,731 to 174,873 15172

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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171,545 - 15170 mRNA_6802 0.56 +0.4
171,576 + 15170 mRNA_6802 0.58 -0.3
171,661 - 15170 mRNA_6802 0.63 -1.0
171,825 + 15170 mRNA_6802 0.72 +2.2
172,104 + 15170 mRNA_6802 0.88 -0.5
172,105 - 15170 mRNA_6802 0.88 +0.7
172,311 + +0.6
172,316 - -1.1
172,426 - -0.8
172,450 + -0.3
172,495 - +0.2
172,567 + 15171 mRNA_6803 0.14 +0.2
172,859 + 15171 mRNA_6803 0.39 +1.6
172,870 - 15171 mRNA_6803 0.40 -0.3
173,001 + 15171 mRNA_6803 0.52 -1.0
173,129 + 15171 mRNA_6803 0.63 +0.9
173,163 + 15171 mRNA_6803 0.66 +0.1
173,273 - 15171 mRNA_6803 0.75 +0.9
173,436 + 15171 mRNA_6803 0.89 +0.1
173,439 - 15171 mRNA_6803 0.90 +0.2
173,604 - +0.7
173,712 - -0.0
173,750 + -0.4
173,769 - +1.1
173,769 + +1.6
173,769 - -0.2
173,770 + -0.7
173,770 - -0.5
173,771 - +0.7
173,778 + +0.4
173,784 + -2.2
173,784 - -0.9
173,791 + -1.2
173,793 + -0.2
173,905 - 15172 mRNA_6804 0.15 +1.2
173,915 - 15172 mRNA_6804 0.16 -1.1
173,916 - 15172 mRNA_6804 0.16 -0.4
173,928 + 15172 mRNA_6804 0.17 +0.3
173,953 + 15172 mRNA_6804 0.19 +0.4
173,974 + 15172 mRNA_6804 0.21 +0.3
174,101 + 15172 mRNA_6804 0.32 -0.7
174,342 - 15172 mRNA_6804 0.53 -0.6

Or see this region's nucleotide sequence