Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6817

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15184 and 15185 are separated by 253 nucleotides15185 and 15186 are separated by 451 nucleotides15186 and 15187 are separated by 171 nucleotides mRNA_6816: 15184 - K02437 gcvH, GCSH glycine cleavage system H protein, at 202,088 to 202,810 15184 mRNA_6817: 15185 - KOG3525 Subtilisin-like proprotein convertase, at 203,064 to 206,112 15185 mRNA_6818: 15186 - KOG0729 26S proteasome regulatory complex, ATPase RPT1, at 206,564 to 206,841 15186 mRNA_6819: 15187 - SUPERFAMILY--SSF103107, at 207,013 to 207,504 15187

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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202,851 + -0.8
202,859 - +1.9
202,865 + +1.0
202,866 - -1.3
202,876 - +0.4
202,888 - +0.0
202,902 + +1.4
202,919 + +1.9
202,924 - +0.2
203,045 - -0.6
203,070 - -0.6
203,744 + 15185 mRNA_6817 0.22 -2.5
203,744 + 15185 mRNA_6817 0.22 -0.1
204,022 + 15185 mRNA_6817 0.31 +1.7
204,138 - 15185 mRNA_6817 0.35 -1.2
204,293 - 15185 mRNA_6817 0.40 +0.4
204,373 + 15185 mRNA_6817 0.43 -0.1
204,646 + 15185 mRNA_6817 0.52 -0.1
204,775 + 15185 mRNA_6817 0.56 +0.9
204,776 + 15185 mRNA_6817 0.56 -0.1
204,891 - 15185 mRNA_6817 0.60 -0.7
205,064 - 15185 mRNA_6817 0.66 -0.4
205,172 - 15185 mRNA_6817 0.69 -0.2
205,334 - 15185 mRNA_6817 0.74 -0.1
205,417 + 15185 mRNA_6817 0.77 -0.6
205,483 - 15185 mRNA_6817 0.79 +0.1
205,590 - 15185 mRNA_6817 0.83 -0.8
205,870 + +0.8
206,044 - +0.1
206,810 + 15186 mRNA_6818 0.88 -0.1

Or see this region's nucleotide sequence