Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6835

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15202 and 15203 are separated by 468 nucleotides mRNA_6834: 15202 - KOG3030 Lipid phosphate phosphatase and related enzymes of the PAP2 family, at 233,665 to 235,762 15202 mRNA_6835: 15203 - Hypothetical Protein, at 236,231 to 236,767 15203

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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235,482 - 15202 mRNA_6834 0.87 +1.0
235,496 - 15202 mRNA_6834 0.87 -1.5
235,612 - -0.1
235,793 - -0.2
236,026 + +0.0
236,086 + +1.2
236,202 + -1.9
236,224 - +0.0
236,267 + -0.3
236,397 - 15203 mRNA_6835 0.31 +1.0
236,526 - 15203 mRNA_6835 0.55 +0.4
236,604 + 15203 mRNA_6835 0.69 +1.8
236,621 + 15203 mRNA_6835 0.73 +0.4
236,621 + 15203 mRNA_6835 0.73 +0.3
236,629 + 15203 mRNA_6835 0.74 -1.4
236,636 + 15203 mRNA_6835 0.75 -0.9
236,687 - 15203 mRNA_6835 0.85 +1.9
236,694 + 15203 mRNA_6835 0.86 +0.6
236,710 - 15203 mRNA_6835 0.89 +1.0
236,789 - +0.5
236,811 - -0.1
236,813 + -0.2
236,817 - +0.5
236,818 + +0.8
236,823 - +0.6
236,824 - -0.5
236,825 - +0.8
236,829 - -0.3
236,831 + -0.1
236,836 - -0.1
236,836 - +0.5
236,836 - +1.0
236,840 + -0.6
236,840 + -0.7
236,858 - -0.1
236,991 + +0.2
237,010 + -0.0
237,025 - -0.5
237,027 - +0.2
237,055 - +0.3
237,064 - -0.5
237,109 + +1.0
237,145 - +0.7
237,145 - +1.1
237,154 + -0.2
237,159 + +1.8
237,262 + -0.2
237,266 + -0.3
237,274 + -0.8
237,274 + -0.0
237,278 + +0.1
237,292 + -0.5
237,299 - -1.2
237,325 - +1.1
237,333 - +0.3
237,361 + -0.7
237,366 + +0.7
237,377 + -0.5
237,378 + +0.8
237,378 + +2.1
237,384 + -0.9
237,415 - -0.2
237,428 + -0.6
237,475 + +0.2
237,519 - -0.0
237,519 - -0.4
237,521 - +0.5
237,526 + +0.7
237,531 + -0.4
237,533 - -0.3
237,533 - +0.4
237,541 + +1.0
237,541 + -0.7
237,541 + -0.1
237,541 + -0.4
237,545 - +0.8
237,557 - +1.5
237,563 + +0.2
237,571 - +0.5
237,571 - +0.9

Or see this region's nucleotide sequence