Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6845

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15212 and 15213 are separated by 103 nucleotides mRNA_6844: 15212 - K12183 TSG101, STP22, VPS23 ESCRT-I complex subunit TSG101, at 253,096 to 258,115 15212 mRNA_6845: 15213 - Hypothetical Protein, at 258,219 to 259,363 15213

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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258,228 - +1.6
258,290 + +0.2
258,445 - 15213 mRNA_6845 0.20 +0.7
258,447 + 15213 mRNA_6845 0.20 +0.3
258,676 - 15213 mRNA_6845 0.40 +1.0
258,798 - 15213 mRNA_6845 0.51 +0.1
258,811 + 15213 mRNA_6845 0.52 -0.0
258,812 + 15213 mRNA_6845 0.52 +0.1
258,907 + 15213 mRNA_6845 0.60 +0.4
258,981 + 15213 mRNA_6845 0.67 -0.3
259,055 - 15213 mRNA_6845 0.73 -0.2
259,121 - 15213 mRNA_6845 0.79 -0.0
259,325 - -1.3
259,907 + -0.0
260,031 + +1.3
260,159 + -0.6
260,283 - -0.4
260,326 + -1.3

Or see this region's nucleotide sequence