Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6854

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15221 and 15222 are separated by 305 nucleotides15222 and 15223 are separated by 332 nucleotides mRNA_6853: 15221 - Interpro Altered inheritance of mitochondria 5, at 279,894 to 280,567 15221 mRNA_6854: 15222 - K16219 NTMT1, METTL11A, NTM1 protein N-terminal methyltransferase, at 280,873 to 281,900 15222 mRNA_6855: 15223 - KOG1601 GATA-4/5/6 transcription factors, at 282,233 to 283,773 15223

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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280,076 + 15221 mRNA_6853 0.27 -0.1
280,083 - 15221 mRNA_6853 0.28 -0.8
280,325 - 15221 mRNA_6853 0.64 -0.2
280,326 - 15221 mRNA_6853 0.64 -0.2
280,328 - 15221 mRNA_6853 0.64 +0.9
280,344 + 15221 mRNA_6853 0.67 +0.0
280,433 - 15221 mRNA_6853 0.80 -0.6
280,477 - 15221 mRNA_6853 0.86 -0.6
280,490 - 15221 mRNA_6853 0.88 -0.8
280,634 + -0.2
280,786 + -0.3
281,198 + 15222 mRNA_6854 0.32 -0.2
281,238 + 15222 mRNA_6854 0.36 +0.1
281,254 - 15222 mRNA_6854 0.37 -0.3
281,300 - 15222 mRNA_6854 0.42 +0.2
281,341 + 15222 mRNA_6854 0.46 -0.2
281,483 + 15222 mRNA_6854 0.59 -0.9
281,527 - 15222 mRNA_6854 0.64 -0.4
281,687 + 15222 mRNA_6854 0.79 +0.0
281,779 - 15222 mRNA_6854 0.88 -0.3
281,797 + 15222 mRNA_6854 0.90 +0.6
281,933 + +1.4
281,941 + -0.6
282,192 - +1.2
282,338 + +2.8
282,372 - -1.4
282,378 + -0.8
282,390 + 15223 mRNA_6855 0.10 -2.1

Or see this region's nucleotide sequence