Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6856

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15223 and 15224 are separated by 288 nucleotides mRNA_6855: 15223 - KOG1601 GATA-4/5/6 transcription factors, at 282,233 to 283,773 15223 mRNA_6856: 15224 - K10395 KIF4_21_27 kinesin family member 4/21/27, at 284,062 to 291,229 15224

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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283,072 + 15223 mRNA_6855 0.54 -0.4
283,225 - 15223 mRNA_6855 0.64 +0.2
283,306 + 15223 mRNA_6855 0.70 -0.2
283,374 + 15223 mRNA_6855 0.74 -0.7
283,528 - 15223 mRNA_6855 0.84 +1.5
283,671 - -0.7
283,675 + -0.1
283,681 - +0.3
283,682 - -0.3
283,684 - +1.0
283,687 - +0.1
283,703 + +1.6
283,710 - -0.4
283,718 + +0.0
283,834 + +0.4
283,985 + -0.2
283,989 - -0.0
283,991 - -0.3
283,991 + -0.6
284,019 - +0.7
284,134 - +0.5
284,136 - -1.4
284,286 - -1.2
284,468 - +1.7
284,652 + +0.0
284,858 - 15224 mRNA_6856 0.11 +0.6
284,911 + 15224 mRNA_6856 0.12 +0.1
285,014 + 15224 mRNA_6856 0.13 +0.5
285,319 - 15224 mRNA_6856 0.18 -0.5
285,337 - 15224 mRNA_6856 0.18 +0.8
285,396 + 15224 mRNA_6856 0.19 +0.6
285,603 - 15224 mRNA_6856 0.21 +0.7
285,605 + 15224 mRNA_6856 0.22 -1.0
285,861 - 15224 mRNA_6856 0.25 -0.1
286,103 + 15224 mRNA_6856 0.28 -0.9
286,218 + 15224 mRNA_6856 0.30 +0.3
286,221 + 15224 mRNA_6856 0.30 +0.5
286,246 + 15224 mRNA_6856 0.30 -0.3
286,372 - 15224 mRNA_6856 0.32 -0.3
286,373 + 15224 mRNA_6856 0.32 -0.1
286,565 + 15224 mRNA_6856 0.35 -0.3
286,578 - 15224 mRNA_6856 0.35 +0.3
286,637 - 15224 mRNA_6856 0.36 -0.2
286,715 + 15224 mRNA_6856 0.37 +0.5
286,721 + 15224 mRNA_6856 0.37 +0.2
286,773 + 15224 mRNA_6856 0.38 +1.2
286,795 - 15224 mRNA_6856 0.38 +1.0
286,972 + 15224 mRNA_6856 0.41 +0.4
287,068 + 15224 mRNA_6856 0.42 +0.3
287,125 - 15224 mRNA_6856 0.43 +0.1
287,133 + 15224 mRNA_6856 0.43 +0.9
287,144 - 15224 mRNA_6856 0.43 -1.3
287,584 - 15224 mRNA_6856 0.49 +0.2
287,615 + 15224 mRNA_6856 0.50 -0.2
287,619 + 15224 mRNA_6856 0.50 -0.8
287,860 + 15224 mRNA_6856 0.53 -0.3
287,924 - 15224 mRNA_6856 0.54 +0.5
288,249 - 15224 mRNA_6856 0.58 +0.3
288,326 - 15224 mRNA_6856 0.59 +1.1
288,401 + 15224 mRNA_6856 0.61 -0.2
288,416 - 15224 mRNA_6856 0.61 -0.8
288,688 + 15224 mRNA_6856 0.65 -1.0
288,693 + 15224 mRNA_6856 0.65 -1.0
288,797 + 15224 mRNA_6856 0.66 +0.3
289,385 - 15224 mRNA_6856 0.74 -0.5
289,601 + 15224 mRNA_6856 0.77 +0.5
289,864 + 15224 mRNA_6856 0.81 +0.8
290,024 - 15224 mRNA_6856 0.83 -1.0
290,215 - 15224 mRNA_6856 0.86 -0.1
290,323 - 15224 mRNA_6856 0.87 -0.5
290,330 + 15224 mRNA_6856 0.87 -0.6
290,424 - 15224 mRNA_6856 0.89 +1.9
290,470 + 15224 mRNA_6856 0.89 -0.2
290,667 - +0.1
290,778 + +0.1
290,887 + +0.5
290,909 + -0.1
290,930 + +0.5
290,941 + -0.6
291,056 + -0.5
291,056 - +0.3
291,219 - -0.9
291,225 - -1.9
291,321 - -0.3
291,324 - +0.0
291,325 - +0.1
291,662 + +0.1
291,838 + +0.5
291,975 + +0.3
292,093 + +0.1
292,120 + -0.6

Or see this region's nucleotide sequence