Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6927

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15294 and 15295 are separated by 234 nucleotides15295 and 15296 are separated by 552 nucleotides mRNA_6926: 15294 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 451,082 to 452,962 15294 mRNA_6927: 15295 - Hypothetical Protein, at 453,197 to 455,324 15295 mRNA_6928: 15296 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685, at 455,877 to 456,215 15296

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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452,446 + 15294 mRNA_6926 0.73 -1.1
452,777 + +0.2
452,976 + -0.6
453,012 - -0.8
453,843 - 15295 mRNA_6927 0.30 +1.0
453,930 - 15295 mRNA_6927 0.34 -0.3
454,628 + 15295 mRNA_6927 0.67 +0.4
455,067 + 15295 mRNA_6927 0.88 +0.3
455,513 + +0.4
455,630 - +0.5
455,631 - +0.5
455,643 - +0.2
455,654 + -0.6
455,823 + -0.4

Or see this region's nucleotide sequence