Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6930

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15298 and 15299 are separated by 508 nucleotides mRNA_6930: 15298 - Hypothetical Protein, at 461,530 to 462,565 15298 mRNA_6931: 15299 - KOG4844 Mitochondrial ribosomal protein S27, at 463,074 to 463,703 15299

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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460,541 + -0.4
460,558 + -1.7
460,662 - -1.1
460,990 + +1.0
461,006 + +1.5
461,204 + +0.6
461,228 + +0.0
461,243 - -0.2
461,377 - +0.5
461,383 - -0.2
461,397 + -0.7
461,404 + +0.9
461,421 - -0.0
461,462 + +0.7
461,464 + +1.1
461,479 - -0.3
461,486 + +0.8
461,508 - +0.4
461,509 + +0.2
461,513 + +0.2
461,514 - +0.1
461,520 - +0.8
461,521 - +1.1
461,522 - +0.7
461,524 + +1.6
461,533 - -0.2
461,543 + -0.1
461,544 + -0.4
461,557 + +1.0
461,561 - +1.2
461,564 + +0.6
461,579 - +1.2
461,683 - 15298 mRNA_6930 0.15 -0.1
461,711 + 15298 mRNA_6930 0.17 +0.3
461,720 - 15298 mRNA_6930 0.18 +0.5
461,727 + 15298 mRNA_6930 0.19 -0.1
461,727 + 15298 mRNA_6930 0.19 +0.1
461,858 + 15298 mRNA_6930 0.32 +0.9
461,861 + 15298 mRNA_6930 0.32 +0.6
461,869 + 15298 mRNA_6930 0.33 +0.3
462,170 + 15298 mRNA_6930 0.62 +0.3
462,200 - 15298 mRNA_6930 0.65 -0.5
462,271 - 15298 mRNA_6930 0.72 -0.0
462,323 - 15298 mRNA_6930 0.77 +0.3
462,327 + 15298 mRNA_6930 0.77 +0.3
462,353 + 15298 mRNA_6930 0.79 +0.7
462,608 - +1.7
462,609 + -0.1
462,609 - +0.7
462,611 + +0.4
462,646 + +0.7
462,718 - +1.1
462,779 + -0.9
462,881 - +0.7
462,900 - +1.2

Or see this region's nucleotide sequence