Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7012

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15379 and 15380 are separated by 301 nucleotides15380 and 15381 are separated by 425 nucleotides mRNA_7011: 15379 - Hypothetical Protein, at 666,364 to 668,286 15379 mRNA_7012: 15380 - KOG4364 Chromatin assembly factor-I, at 668,588 to 672,215 15380 mRNA_7013: 15381 - K10755 RFC2_4 replication factor C subunit 2/4, at 672,641 to 674,296 15381

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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668,106 - -0.2
668,124 - +0.1
668,127 + -0.9
668,136 + +0.1
668,139 - -0.2
668,161 - -0.7
668,161 + +1.4
668,168 + +0.1
668,179 - -0.1
668,179 - -0.6
668,211 + -0.4
668,226 - -0.3
668,227 - -0.3
668,230 + -0.2
668,235 + -1.0
668,259 + +0.0
668,270 - +0.7
668,275 + +0.7
668,285 - -0.6
668,303 - -0.2
668,305 + +0.2
668,306 + +0.2
668,314 - -0.6
668,331 - +0.3
668,339 + +0.0
668,366 - -0.0
668,385 + +0.2
668,388 - +0.2
668,395 - -0.7
668,400 - -1.2
668,402 - +0.7
668,403 - +0.3
668,412 + -0.5
668,425 + +0.5
668,425 - +0.5
668,453 + +0.6
668,465 - +0.7
668,721 + +1.1
671,286 + 15380 mRNA_7012 0.74 +0.8
672,475 - -0.2
672,488 + +0.3
672,502 - -1.1
672,502 + -0.2
672,513 + +1.5
672,651 + +0.4

Or see this region's nucleotide sequence