Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7015

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15383 and 15384 are separated by 153 nucleotides mRNA_7015: 15383 - KOG2913 Predicted membrane protein, at 678,211 to 680,397 15383 mRNA_7016: 15384 - K01142 E3.1.11.2, xthA exodeoxyribonuclease III, at 680,551 to 683,526 15384

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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677,376 + -0.3
677,668 - -0.7
677,939 - +2.0
678,090 + +0.4
678,091 + -1.0
678,262 + -0.8
678,277 - +1.6
678,384 - -0.5
678,403 + -0.3
678,405 - +0.4
678,529 - 15383 mRNA_7015 0.15 -1.2
678,691 - 15383 mRNA_7015 0.22 +0.9
678,985 - 15383 mRNA_7015 0.35 +1.0
679,036 + 15383 mRNA_7015 0.38 -1.7
679,572 - 15383 mRNA_7015 0.62 +1.4
679,869 - 15383 mRNA_7015 0.76 -0.4
680,157 - 15383 mRNA_7015 0.89 -0.1
680,585 + +0.0
680,694 - +0.0
680,711 + -0.2
680,745 + +0.1
680,749 + +0.1
681,158 - 15384 mRNA_7016 0.20 +1.3
681,343 - 15384 mRNA_7016 0.27 +1.9

Or see this region's nucleotide sequence