Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7041

Experiment: 40 hrs Low Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15408 and 15409 are separated by 436 nucleotides15409 and 15410 are separated by 406 nucleotides mRNA_7040: 15408 - Hypothetical Protein, at 733,097 to 733,346 15408 mRNA_7041: 15409 - KOG1577 Aldo/keto reductase family proteins, at 733,783 to 735,045 15409 mRNA_7042: 15410 - Hypothetical Protein, at 735,452 to 736,654 15410

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
remove
732,808 + +0.0
732,993 - -0.9
733,013 - -0.6
733,125 - 15408 mRNA_7040 0.11 +0.0
733,137 - 15408 mRNA_7040 0.16 -0.6
733,145 + 15408 mRNA_7040 0.19 +0.2
733,154 - 15408 mRNA_7040 0.23 +0.0
733,279 + 15408 mRNA_7040 0.73 -0.5
733,281 - 15408 mRNA_7040 0.74 -1.0
733,289 + 15408 mRNA_7040 0.77 +0.1
733,309 + 15408 mRNA_7040 0.85 -0.5
733,316 - 15408 mRNA_7040 0.88 -0.8
733,318 + 15408 mRNA_7040 0.88 -0.3
733,321 + 15408 mRNA_7040 0.90 -0.9
733,325 + +0.5
733,325 - +0.5
733,326 - -0.3
733,327 - -0.1
733,328 + -0.2
733,332 + -1.3
733,340 + -0.8
733,344 - +0.2
733,351 - -1.7
733,356 + -0.2
733,356 + +0.7
733,367 - -1.3
733,393 - +0.8
733,470 - +0.1
733,476 + +0.8
733,477 + +0.4
733,488 + +0.1
733,488 + -0.1
733,490 + -0.2
733,490 + +0.0
733,491 - -0.3
733,493 - +0.4
733,493 - +0.3
733,494 + +0.3
733,496 + +0.2
733,505 - -2.0
733,547 - -1.1
733,548 - +0.1
733,552 - +0.4
733,566 - +1.7
733,567 - +0.3
733,567 + -0.5
733,568 - -0.2
733,568 - +0.6
733,570 - +0.4
733,571 + -0.6
733,722 - +0.2
733,733 + -0.3
733,751 + +0.0
733,885 + +1.0
734,184 - 15409 mRNA_7041 0.32 +0.5
734,188 + 15409 mRNA_7041 0.32 +0.7
735,199 - +0.1
735,671 - 15410 mRNA_7042 0.18 +1.0
735,776 - 15410 mRNA_7042 0.27 -0.2
735,897 + 15410 mRNA_7042 0.37 +2.3

Or see this region's nucleotide sequence