Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7098

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15465 and 15466 are separated by 225 nucleotides15466 and 15467 are separated by 382 nucleotides mRNA_7097: 15465 - K03064 PSMC6, RPT4 26S proteasome regulatory subunit T4, at 875,663 to 877,708 15465 mRNA_7098: 15466 - KOG2633 Hismacro and SEC14 domain-containing proteins, at 877,934 to 879,350 15466 mRNA_7099: 15467 - K12845 SNU13, NHP2L U4/U6 small nuclear ribonucleoprotein SNU13, at 879,733 to 880,505 15467

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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877,772 + -0.2
877,798 + +0.1
877,803 + +0.2
878,086 + 15466 mRNA_7098 0.11 +0.2
878,232 - 15466 mRNA_7098 0.21 -0.2
878,357 - 15466 mRNA_7098 0.30 -0.0
878,380 - 15466 mRNA_7098 0.31 +0.0
878,409 + 15466 mRNA_7098 0.34 -0.1
878,524 - 15466 mRNA_7098 0.42 +1.3
878,643 - 15466 mRNA_7098 0.50 +1.2
878,806 - 15466 mRNA_7098 0.62 -0.7
878,925 - 15466 mRNA_7098 0.70 -0.2
878,929 + 15466 mRNA_7098 0.70 +0.4
878,948 - 15466 mRNA_7098 0.72 +0.2
879,240 + -0.0
879,410 + +0.2
879,524 + -0.5
879,526 + -1.0
879,535 - -0.6
879,548 - +1.1

Or see this region's nucleotide sequence