Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7102

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15469 and 15470 are separated by 454 nucleotides mRNA_7101: 15469 - K08968 E1.8.4.14 L-methionine (R)-S-oxide reductase, at 881,719 to 882,426 15469 mRNA_7102: 15470 - K03441 GLP-F aquaglyceroporin related protein, other eukaryote, at 882,881 to 885,755 15470

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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881,882 - 15469 mRNA_7101 0.23 +0.7
881,896 + 15469 mRNA_7101 0.25 -0.6
882,017 + 15469 mRNA_7101 0.42 -0.7
882,027 - 15469 mRNA_7101 0.44 +0.5
882,053 - 15469 mRNA_7101 0.47 +0.1
882,114 - 15469 mRNA_7101 0.56 +0.1
882,177 - 15469 mRNA_7101 0.65 +0.3
882,187 - 15469 mRNA_7101 0.66 -0.5
882,189 + 15469 mRNA_7101 0.66 -0.6
882,191 + 15469 mRNA_7101 0.67 -0.1
882,192 - 15469 mRNA_7101 0.67 +0.8
882,192 - 15469 mRNA_7101 0.67 -0.1
882,209 + 15469 mRNA_7101 0.69 +0.1
882,213 - 15469 mRNA_7101 0.70 -0.3
882,219 + 15469 mRNA_7101 0.71 +0.3
882,236 + 15469 mRNA_7101 0.73 -0.2
882,380 - -0.1
882,464 - -0.2
882,465 + -0.1
882,472 - +1.2
882,475 - -0.2
882,477 - -1.8
882,485 - +0.5
882,486 - -0.3
882,585 + -0.4
882,648 - -0.4
882,655 - +0.6
882,787 - -1.1
882,790 - +1.8
883,060 - -0.1
883,514 + 15470 mRNA_7102 0.22 +0.1
884,246 + 15470 mRNA_7102 0.47 +1.0
884,402 - 15470 mRNA_7102 0.53 -0.1
884,443 + 15470 mRNA_7102 0.54 +0.5
884,998 - 15470 mRNA_7102 0.74 +0.5
885,194 + 15470 mRNA_7102 0.80 +1.8
885,285 + 15470 mRNA_7102 0.84 -0.3
885,287 + 15470 mRNA_7102 0.84 +0.0
885,438 - 15470 mRNA_7102 0.89 +0.2
885,574 + -0.5
885,699 - +0.0
885,706 - -0.1
885,720 + +0.0
886,027 - +0.9
886,487 + -2.6
886,641 + -0.1

Or see this region's nucleotide sequence